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DSAIRM  

Dynamical Systems Approach to Immune Response Modeling
View on CRAN: Click here


Download and install DSAIRM package within the R console
Install from CRAN:
install.packages("DSAIRM")

Install from Github:
library("remotes")
install_github("cran/DSAIRM")

Install by package version:
library("remotes")
install_version("DSAIRM", "0.9.6")



Attach the package and use:
library("DSAIRM")
Maintained by
Andreas Handel
[Scholar Profile | Author Map]
First Published: 2018-08-13
Latest Update: 2023-08-23
Description:
Simulation models (apps) of various within-host immune response scenarios. The purpose of the package is to help individuals learn about within-host infection and immune response modeling from a dynamical systems perspective. All apps include explanations of the underlying models and instructions on what to do with the models.
How to cite:
Andreas Handel (2018). DSAIRM: Dynamical Systems Approach to Immune Response Modeling. R package version 0.9.6, https://cran.r-project.org/web/packages/DSAIRM. Accessed 08 May. 2025.
Previous versions and publish date:
0.4.0 (2018-08-13 16:10), 0.5.0 (2019-01-17 06:10), 0.5.5 (2019-02-11 22:33), 0.8.0 (2019-04-04 14:20), 0.8.2 (2019-07-08 06:10), 0.8.6 (2020-07-14 13:50), 0.8.7 (2021-03-20 21:40), 0.9.3 (2021-07-29 00:10), 0.9.5 (2022-07-01 10:00)
Other packages that cited DSAIRM R package
View DSAIRM citation profile
Other R packages that DSAIRM depends, imports, suggests or enhances
Complete documentation for DSAIRM
Functions, R codes and Examples using the DSAIRM R package
Some associated functions: DSAIRM . check_simresults . dsairmmenu . generate_documentation . generate_fctcall . generate_ggplot . generate_modelsettings . generate_plotly . generate_shinyinput . generate_text . hayden96flu . run_model . schirm20strep . simulate_acutevirusir_ode . simulate_bacteria_fit . simulate_basicbacteria_discrete . simulate_basicbacteria_modelexploration . simulate_basicbacteria_ode . simulate_basicvirus_fit . simulate_basicvirus_modelexploration . simulate_basicvirus_ode . simulate_basicvirus_stochastic . simulate_chronicvirusir_ode . simulate_confint_fit . simulate_drugresistance_stochastic . simulate_extendedbacteria_ode . simulate_fludrug_fit . simulate_modelcomparison_fit . simulate_modelvariants_ode . simulate_pkpdmodel_ode . simulate_usanalysis . simulate_virusandir_ode . simulate_virusandtx_ode . 
Some associated R codes: DSAIRM.R . check_simresults.R . data.R . dsairmmenu.R . generate_documentation.R . generate_fctcall.R . generate_ggplot.R . generate_modelsettings.R . generate_plotly.R . generate_shinyinput.R . generate_text.R . run_model.R . simulate_acutevirusir_ode.R . simulate_bacteria_fit.R . simulate_basicbacteria_discrete.R . simulate_basicbacteria_modelexploration.R . simulate_basicbacteria_ode.R . simulate_basicvirus_fit.R . simulate_basicvirus_modelexploration.R . simulate_basicvirus_ode.R . simulate_basicvirus_stochastic.R . simulate_chronicvirusir_ode.R . simulate_confint_fit.R . simulate_drugresistance_stochastic.R . simulate_extendedbacteria_ode.R . simulate_fludrug_fit.R . simulate_modelcomparison_fit.R . simulate_modelvariants_ode.R . simulate_pkpdmodel_ode.R . simulate_usanalysis.R . simulate_virusandir_ode.R . simulate_virusandtx_ode.R .  Full DSAIRM package functions and examples
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