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DRomics
View on CRAN: Click
here
Download and install DRomics package within the R console
Install from CRAN:
install.packages("DRomics")
Install from Github:
library("remotes")
install_github("cran/DRomics")
Install by package version:
library("remotes")
install_version("DRomics", "2.6-2")
Attach the package and use:
library("DRomics")
Maintained by
Aurelie Siberchicot
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.DRomics . https://github.com/lbbe-software/DRomics/issues . https://lbbe-software.github.io/DRomics/ . DRomics citation info . DRomics results . DRomics.pdf . Overview of the DRomics package . DRomics_2.6-2.tar.gz . DRomics_2.6-2.zip . DRomics_2.6-2.zip . DRomics_2.6-2.zip . DRomics_2.6-2.tgz . DRomics_2.6-2.tgz . DRomics_2.6-2.tgz . DRomics_2.6-2.tgz . DRomics_2.6-2.tgz . DRomics_2.6-2.tgz . DRomics archive . https://CRAN.R-project.org/package=DRomics .
First Published: 2019-01-16
Latest Update: 2024-01-31
Description:
Several functions are provided for dose-response (or concentration-response) characterization from omics data. 'DRomics' is especially dedicated to omics data obtained using a typical dose-response design, favoring a great number of tested doses (or concentrations) rather than a great number of replicates (no need of replicates). 'DRomics' provides functions 1) to check, normalize and or transform data, 2) to select monotonic or biphasic significantly responding items (e.g. probes, metabolites), 3) to choose the best-fit model among a predefined family of monotonic and biphasic models to describe each selected item, 4) to derive a benchmark dose or concentration and a typology of response from each fitted curve. In the available version data are supposed to be single-channel microarray data in log2, RNAseq data in raw counts, or already pretreated continuous omics data (such as metabolomic data) in log scale. In order to link responses across biological levels based on a common method, 'DRomics' also handles apical data as long as they are continuous and follow a normal distribution for each dose or concentration, with a common standard error. For further details see Delignette-Muller et al (2023) and Larras et al (2018) .
How to cite:
Aurelie Siberchicot (2019). DRomics: Dose Response for Omics. R package version 2.6-2, https://cran.r-project.org/web/packages/DRomics. Accessed 29 Mar. 2025.
Previous versions and publish date:
Other packages that cited DRomics R package
View DRomics citation profile
Other R packages that DRomics depends,
imports, suggests or enhances
Complete documentation for DRomics
Functions, R codes and Examples using
the DRomics R package
Some associated functions: PCAdataplot . RNAseqdata . Scenedesmus . Zhou . bmdboot . bmdcalc . bmdplot . bmdplotwithgradient . continuousanchoringdata . curvesplot . drcfit . ecdfplotwithCI . ecdfquantileplot . formatdata4DRomics . itemselect . metabolomicdata . microarraydata . selectgroups . sensitivityplot . targetplot . trendplot . zebraf .
Some associated R codes: PCAdataplot.R . RNAseqdata.R . bmdboot.R . bmdcalc.R . bmdplot.R . bmdplotwithgradient.R . continuousanchoringdata.R . curvesplot.R . drcfit.R . ecdfplotwithCI.R . ecdfquantileplot.R . formatdata4DRomics.R . itemselect.R . metabolomicdata.R . microarraydata.R . omicdata.R . selectgroups.R . sensitivityplot.R . targetplot.R . trendplot.R . util-basicandfitfunc.R . util-plotfunc.R . Full DRomics package functions and examples
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