Other packages > Find by keyword >

DRomics  

Dose Response for Omics
View on CRAN: Click here


Download and install DRomics package within the R console
Install from CRAN:
install.packages("DRomics")

Install from Github:
library("remotes")
install_github("cran/DRomics")

Install by package version:
library("remotes")
install_version("DRomics", "2.6-2")



Attach the package and use:
library("DRomics")
Maintained by
Aurelie Siberchicot
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-01-16
Latest Update: 2024-10-16
Description:
Several functions are provided for dose-response (or concentration-response) characterization from omics data. 'DRomics' is especially dedicated to omics data obtained using a typical dose-response design, favoring a great number of tested doses (or concentrations) rather than a great number of replicates (no need of replicates). 'DRomics' provides functions 1) to check, normalize and or transform data, 2) to select monotonic or biphasic significantly responding items (e.g. probes, metabolites), 3) to choose the best-fit model among a predefined family of monotonic and biphasic models to describe each selected item, 4) to derive a benchmark dose or concentration and a typology of response from each fitted curve. In the available version data are supposed to be single-channel microarray data in log2, RNAseq data in raw counts, or already pretreated continuous omics data (such as metabolomic data) in log scale. In order to link responses across biological levels based on a common method, 'DRomics' also handles apical data as long as they are continuous and follow a normal distribution for each dose or concentration, with a common standard error. For further details see Delignette-Muller et al (2023) and Larras et al (2018) .
How to cite:
Aurelie Siberchicot (2019). DRomics: Dose Response for Omics. R package version 2.6-2, https://cran.r-project.org/web/packages/DRomics. Accessed 10 Mar. 2026.
Previous versions and publish date:
1.0-2 (2019-01-16 19:50), 2.0-1 (2019-09-16 12:40), 2.1-2 (2020-09-22 17:20), 2.1-3 (2020-09-23 09:40), 2.2-0 (2021-02-09 18:50), 2.3-0 (2021-10-04 10:00), 2.4-0 (2022-01-06 11:50), 2.5-0 (2023-01-24 16:20), 2.5-2 (2024-01-31 10:30), 2.6-0 (2024-09-30 19:50)
Other packages that cited DRomics R package
View DRomics citation profile
Other R packages that DRomics depends, imports, suggests or enhances
Complete documentation for DRomics
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

envirem  
Generation of ENVIREM Variables
Generation of bioclimatic rasters that are complementary to the typical 19 bioclim variables. ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
gena  
Genetic Algorithm and Particle Swarm Optimization
Implements genetic algorithm and particle swarm algorithm for real-valued functions. Various modific ...
Download / Learn more Package Citations See dependency  
plyr  
Tools for Splitting, Applying and Combining Data
A set of tools that solves a common set of problems: you need to break a big problem down into mana ...
Download / Learn more Package Citations See dependency  

26,293

R Packages

225,784

Dependencies

70,376

Author Associations

26,294

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA