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DRaWR  

Discriminative Random Walk with Restart
View on CRAN: Click here


Download and install DRaWR package within the R console
Install from CRAN:
install.packages("DRaWR")

Install from Github:
library("remotes")
install_github("cran/DRaWR")

Install by package version:
library("remotes")
install_version("DRaWR", "1.0.3")



Attach the package and use:
library("DRaWR")
Maintained by
Charles Blatti
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-02-05
Latest Update: 2022-03-24
Description:
We present DRaWR, a network-based method for ranking genes or properties related to a given gene set. Such related genes or properties are identified from among the nodes of a large, heterogeneous network of biological information. Our method involves a random walk with restarts, performed on an initial network with multiple node and edge types, preserving more of the original, specific property information than current methods that operate on homogeneous networks. In this first stage of our algorithm, we find the properties that are the most relevant to the given gene set and extract a subnetwork of the original network, comprising only the relevant properties. We then rerank genes by their similarity to the given gene set, based on a second random walk with restarts, performed on the above subnetwork.
How to cite:
Charles Blatti (2016). DRaWR: Discriminative Random Walk with Restart. R package version 1.0.3, https://cran.r-project.org/web/packages/DRaWR. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0.1 (2016-02-05 00:55)
Other packages that cited DRaWR R package
View DRaWR citation profile
Other R packages that DRaWR depends, imports, suggests or enhances
Complete documentation for DRaWR
Functions, R codes and Examples using the DRaWR R package
Some associated functions: DRaWR . RWR . threeCol2MaxMat . threeCol2listMat . transmat . 
Some associated R codes: DRaWR.R .  Full DRaWR package functions and examples
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