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DIRECT
View on CRAN: Click
here
Download and install DIRECT package within the R console
Install from CRAN:
install.packages("DIRECT")
Install from Github:
library("remotes")
install_github("cran/DIRECT")
Install by package version:
library("remotes")
install_version("DIRECT", "1.1.0")
Attach the package and use:
library("DIRECT")
Maintained by
Audrey Q. Fu
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-03-26
Latest Update: 2016-04-01
Description:
A Bayesian clustering method for replicated time series or replicated measurements from multiple experimental conditions, e.g., time-course gene expression data. It estimates the number of clusters directly from the data using a Dirichlet-process prior. See Fu, A. Q., Russell, S., Bray, S. and Tavare, S. (2013) Bayesian clustering of replicated time-course gene expression data with weak signals. The Annals of Applied Statistics. 7(3) 1334-1361. .
How to cite:
Audrey Q. Fu (2012). DIRECT: Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior. R package version 1.1.0, https://cran.r-project.org/web/packages/DIRECT
Other packages that cited DIRECT R package
View DIRECT citation profile
Other R packages that DIRECT depends,
imports, suggests or enhances
Functions, R codes and Examples using
the DIRECT R package
Some associated functions: DIRECT-package . DIRECT . DPMCMC . Dirichlet . MVNorm . outputData . plotClustersMean . plotClustersPCA . plotClustersSD . plotSimulation . relabel . resampleClusterProb . simuDataREM . summaryDIRECT . tc.data .
Some associated R codes: DIRECT.R . DPMCMC.R . Dirichlet.R . MVNorm.R . arrayTSData.R . computeClusterMean.R . computeClusterParHastingsRatio.R . computeCovMtx.R . computeLogLik.R . computeLogLikInd.R . normalizeProbMtx.R . outputData.R . plotClustersMean.R . plotClustersPCA.R . plotClustersSD.R . plotSimulation.R . reassignLabels.R . reassignLabelsVec.R . reflect.R . relabel.R . resampleClusterProb.R . rmvnormpost.R . simuDataREM.R . simuMultiClustREM.R . simuOneClusterREM.R . simuProcess.R . simulateFromPrior.R . simulateObserved.R . simulateStocProc.R . summaryDIRECT.R . updateClusterMemberships_MH_FRBT.R . updateClusterMemberships_MH_Neal.R . updateDAlpha.R . updateIndMean.R . updateRandomEffectsInd.R . Full DIRECT package functions and examples
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