Other packages > Find by keyword >

DGEobj  

Differential Gene Expression (DGE) Analysis Results Data Object
View on CRAN: Click here


Download and install DGEobj package within the R console
Install from CRAN:
install.packages("DGEobj")

Install from Github:
library("remotes")
install_github("cran/DGEobj")

Install by package version:
library("remotes")
install_version("DGEobj", "1.1.2")



Attach the package and use:
library("DGEobj")
Maintained by
Connie Brett
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-12-07
Latest Update: 2022-05-16
Description:
Provides a flexible container to manage and annotate Differential Gene Expression (DGE) analysis results (Smythe et. al (2015) ). The DGEobj has data slots for row (gene), col (samples), assays (matrix n-rows by m-samples dimensions) and metadata (not keyed to row, col, or assays). A set of accessory functions to deposit, query and retrieve subsets of a data workflow has been provided. Attributes are used to capture metadata such as species and gene model, including reproducibility information such that a 3rd party can access a DGEobj history to see how each data object was created or modified. Since the DGEobj is customizable and extensible it is not limited to RNA-seq analysis types of workflows -- it can accommodate nearly any data analysis workflow that starts from a matrix of assays (rows) by samples (columns).
How to cite:
Connie Brett (2020). DGEobj: Differential Gene Expression (DGE) Analysis Results Data Object. R package version 1.1.2, https://cran.r-project.org/web/packages/DGEobj. Accessed 26 Aug. 2026.
Previous versions and publish date:
1.0.1 (2020-12-07 10:30), 1.0.3 (2021-04-09 23:30), 1.1.0 (2022-03-25 19:10), 1.1.1 (2022-05-10 11:30), (2026-07-09 08:01)
Other packages that cited DGEobj R package
View DGEobj citation profile
Other R packages that DGEobj depends, imports, suggests or enhances
Complete documentation for DGEobj
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

clinUtils  
General Utility Functions for Analysis of Clinical Data
Utility functions to facilitate the import, the reporting and analysis of clinical data. Example ...
Download / Learn more Package Citations See dependency  
SelvarMix  
Regularization for Variable Selection in Model-Based Clustering and Discriminant Analysis
Performs a regularization approach to variable selection in themodel-based clustering and classifica ...
Download / Learn more Package Citations See dependency  
RCytoGPS  
Using Cytogenetics Data in R
Defines classes and methods to process text-based cytogenetics using the CytoGPS web site, then imp ...
Download / Learn more Package Citations See dependency  
ncodeR  
Techniques for Automated Classifiers
A set of techniques that can be used to develop, validate, and implement automated classifiers. A po ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
leafgl  
High-Performance 'WebGl' Rendering for Package 'leaflet'
Provides bindings to the 'Leaflet.glify' JavaScript library which extends the 'leaflet' JavaScript l ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA