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DGEobj
View on CRAN: Click
here
Download and install DGEobj package within the R console
Install from CRAN:
install.packages("DGEobj")
Install from Github:
library("remotes")
install_github("cran/DGEobj")
Install by package version:
library("remotes")
install_version("DGEobj", "1.1.2")
Attach the package and use:
library("DGEobj")
Maintained by
Connie Brett
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-12-07
Latest Update: 2022-05-16
Description:
Provides a flexible container to manage and annotate Differential Gene
Expression (DGE) analysis results (Smythe et. al (2015) ).
The DGEobj has data slots for row (gene), col (samples), assays (matrix n-rows
by m-samples dimensions) and metadata (not keyed to row, col, or assays).
A set of accessory functions to deposit, query and retrieve subsets of a data
workflow has been provided. Attributes are used to capture metadata such as
species and gene model, including reproducibility information such that a 3rd
party can access a DGEobj history to see how each data object was created or
modified. Since the DGEobj is customizable and extensible it is not limited
to RNA-seq analysis types of workflows -- it can accommodate nearly any data
analysis workflow that starts from a matrix of assays (rows) by samples (columns).
How to cite:
Connie Brett (2020). DGEobj: Differential Gene Expression (DGE) Analysis Results Data Object. R package version 1.1.2, https://cran.r-project.org/web/packages/DGEobj
Previous versions and publish date:
Other packages that cited DGEobj R package
View DGEobj citation profile
Other R packages that DGEobj depends,
imports, suggests or enhances
Functions, R codes and Examples using
the DGEobj R package
Some associated functions: DGEobj-package . addItem . addItems . annotateDGEobj . as.list.DGEobj . baseType . baseTypes . dim.DGEobj . dimnames.DGEobj . getAttributes . getBaseType . getItem . getItems . getType . initDGEobj . initDGEobjDef . inventory . newType . print.DGEobj . resetDGEobj . rmItem . setAttributes . showAttributes . showMeta . showTypes . sub-.DGEobj . subset.DGEobj .
Some associated R codes: DGEobj.R . addItem.R . annotate.R . attributes.R . get.R . init.R . internal.R . reset.R . rmItem.R . subset.R . types.R . utils.R . Full DGEobj package functions and examples
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