Other packages > Find by keyword >

DGEobj  

Differential Gene Expression (DGE) Analysis Results Data Object
View on CRAN: Click here


Download and install DGEobj package within the R console
Install from CRAN:
install.packages("DGEobj")

Install from Github:
library("remotes")
install_github("cran/DGEobj")

Install by package version:
library("remotes")
install_version("DGEobj", "1.1.2")



Attach the package and use:
library("DGEobj")
Maintained by
Connie Brett
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-12-07
Latest Update: 2022-05-16
Description:
Provides a flexible container to manage and annotate Differential Gene Expression (DGE) analysis results (Smythe et. al (2015) ). The DGEobj has data slots for row (gene), col (samples), assays (matrix n-rows by m-samples dimensions) and metadata (not keyed to row, col, or assays). A set of accessory functions to deposit, query and retrieve subsets of a data workflow has been provided. Attributes are used to capture metadata such as species and gene model, including reproducibility information such that a 3rd party can access a DGEobj history to see how each data object was created or modified. Since the DGEobj is customizable and extensible it is not limited to RNA-seq analysis types of workflows -- it can accommodate nearly any data analysis workflow that starts from a matrix of assays (rows) by samples (columns).
How to cite:
Connie Brett (2020). DGEobj: Differential Gene Expression (DGE) Analysis Results Data Object. R package version 1.1.2, https://cran.r-project.org/web/packages/DGEobj. Accessed 07 Mar. 2026.
Previous versions and publish date:
1.0.1 (2020-12-07 10:30), 1.0.3 (2021-04-09 23:30), 1.1.0 (2022-03-25 19:10), 1.1.1 (2022-05-10 11:30)
Other packages that cited DGEobj R package
View DGEobj citation profile
Other R packages that DGEobj depends, imports, suggests or enhances
Complete documentation for DGEobj
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

testDriveR  
Teaching Data for Statistics and Data Science
Provides data sets for teaching statistics and data science courses. It includes a sample of data f ...
Download / Learn more Package Citations See dependency  
SAMtool  
Stock Assessment Methods Toolkit
Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform ...
Download / Learn more Package Citations See dependency  
ReviewR  
A Light-Weight, Portable Tool for Reviewing Individual Patient Records
A portable Shiny tool to explore patient-level electronic health record data and perform chart revi ...
Download / Learn more Package Citations See dependency  
lmSubsets  
Exact Variable-Subset Selection in Linear Regression
Exact and approximation algorithms for variable-subset selection in ordinary linear regression mode ...
Download / Learn more Package Citations See dependency  
portalr  
Create Useful Summaries of the Portal Data
Download and generate summaries for the rodent, plant, ant, and weather data from the Portal Projec ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,376

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA