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DGCA
View on CRAN: Click
here
Download and install DGCA package within the R console
Install from CRAN:
install.packages("DGCA")
Install from Github:
library("remotes")
install_github("cran/DGCA")
Install by package version:
library("remotes")
install_version("DGCA", "1.0.3")
Attach the package and use:
library("DGCA")
Maintained by
Andrew McKenzie
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
First Published: 2016-11-17
Latest Update: 2023-03-15
Description:
Performs differential correlation analysis on input
matrices, with multiple conditions specified by a design matrix. Contains
functions to filter, process, save, visualize, and interpret differential
correlations of identifier-pairs across the entire identifier space, or with
respect to a particular set of identifiers (e.g., one). Also contains several
functions to perform differential correlation analysis on clusters (i.e., modules)
or genes. Finally, it contains functions to generate empirical p-values for the
hypothesis tests and adjust them for multiple comparisons. Although the package
was built with gene expression data in mind, it is applicable to other types of
genomics data as well, in addition to being potentially applicable to data from
other fields entirely. It is described more fully in the manuscript
introducing it, freely available at .
How to cite:
Andrew McKenzie (2016). DGCA: Differential Gene Correlation Analysis. R package version 1.0.3, https://cran.r-project.org/web/packages/DGCA. Accessed 23 Apr. 2025.
Previous versions and publish date:
Other packages that cited DGCA R package
View DGCA citation profile
Other R packages that DGCA depends,
imports, suggests or enhances
Functions, R codes and Examples using
the DGCA R package
Some associated functions: DGCA . adjustPVals . ages_darmanis . bigEmpPVals . corMats-class . dCorAvg . dCorClass . dCorMats . dCorrs . darmanis . dcPair-class . dcTopPairs . ddMEGENA . ddcorAll . ddcorFindSignificant . ddcorGO . ddplot . design_mat . extractModuleGO . filterGenes . findGOTermEnrichment . getCors . getDCorPerm . getDCors . getGroupsFromDesign . makeDesign . matCorSig . matCorr . matNSamp . moduleDC . moduleGO . pairwiseDCor . permQValue . plotCors . plotGOOneGroup . plotGOTwoGroups . plotModuleGO . plotVals . switchGenesToHGCN . topDCGenes .
Some associated R codes: adjustPVals.R . bigEmpPVals.R . dCor.R . dCorAvg.R . dCorClass.R . dCorMats.R . dcTopPairs.R . ddMEGENA.R . ddcorAll.R . ddcorClasses.R . ddcorGO.R . ddplot.R . designMats.R . dgca_package.R . filterGenes.R . getCors.R . getDCorPerm.R . getDCors.R . makeDesign.R . matCorSig.R . matCorr.R . matNSamp.R . moduleDC.R . moduleGO.R . pairwiseDCor.R . permQValue.R . plotCors.R . plotGOOnegroup.R . plotGOTwoGroups.R . plotVals.R . topDCGenes.R . Full DGCA package functions and examples
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