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DESNP  

Differentially Expressed Single Nucleotide Polymorphism
View on CRAN: Click here


Download and install DESNP package within the R console
Install from CRAN:
install.packages("DESNP")

Install from Github:
library("remotes")
install_github("cran/DESNP")

Install by package version:
library("remotes")
install_version("DESNP", "0.1.0")



Attach the package and use:
library("DESNP")
Maintained by
Sayanti Guha Majumdar
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-03-19
Latest Update: 2026-03-19
Description:
Provides a framework for the identification and analysis of Differentially Expressed Single Nucleotide Polymorphisms (deSNPs) using high-throughput sequencing data. It enables users to import SNP count data from variant files, perform allele-specific read count extraction, and statistically detect SNPs showing significant differences in allele expression between biological conditions or sample groups. This package contains tools for calculating SNP-index and Delta SNP-index from VCF-derived allele depth data with statistical testing and filtering, including sliding-window analysis of genomic regions.
How to cite:
Sayanti Guha Majumdar (2026). DESNP: Differentially Expressed Single Nucleotide Polymorphism. R package version 0.1.0, https://cran.r-project.org/web/packages/DESNP. Accessed 24 Oct. 2026.
Previous versions and publish date:
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Complete documentation for DESNP
Functions, R codes and Examples using the DESNP R package
Full DESNP package functions and examples
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