Other packages > Find by keyword >

DEHOGT  

Differentially Expressed Heterogeneous Overdispersion Gene Test for Count Data
View on CRAN: Click here


Download and install DEHOGT package within the R console
Install from CRAN:
install.packages("DEHOGT")

Install from Github:
library("remotes")
install_github("cran/DEHOGT")

Install by package version:
library("remotes")
install_version("DEHOGT", "0.99.0")



Attach the package and use:
library("DEHOGT")
Maintained by
Arlina Shen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-09-13
Latest Update: 2024-09-13
Description:
Implements a generalized linear model approach for detecting differentially expressed genes across treatment groups in count data. The package supports both quasi-Poisson and negative binomial models to handle over-dispersion, ensuring robust identification of differential expression. It allows for the inclusion of treatment effects and gene-wise covariates, as well as normalization factors for accurate scaling across samples. Additionally, it incorporates statistical significance testing with options for p-value adjustment and log2 fold range thresholds, making it suitable for RNA-seq analysis as described in by Xu et al., (2024) <doi:10.1371/journal.pone.0300565>.
How to cite:
Arlina Shen (2024). DEHOGT: Differentially Expressed Heterogeneous Overdispersion Gene Test for Count Data. R package version 0.99.0, https://cran.r-project.org/web/packages/DEHOGT. Accessed 28 Sep. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited DEHOGT R package
View DEHOGT citation profile
Other R packages that DEHOGT depends, imports, suggests or enhances
Complete documentation for DEHOGT
Functions, R codes and Examples using the DEHOGT R package
Full DEHOGT package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

plm  
Linear Models for Panel Data
A set of estimators for models and (robust) covariance matrices, and tests for panel data econometr ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
mhtboot  
Multiple Hypothesis Test Based on Distribution of p Values
A framework for multiple hypothesis testing based on distribution of p values. It is well known tha ...
Download / Learn more Package Citations See dependency  
semTable  
Structural Equation Modeling Tables
For confirmatory factor analysis ('CFA') and structural equation models ('SEM') estimated with the ...
Download / Learn more Package Citations See dependency  
glogis  
Fitting and Testing Generalized Logistic Distributions
Tools for the generalized logistic distribution (Type I, also known as skew-logistic distribution), ...
Download / Learn more Package Citations See dependency  
mbRes  
Exploration of Multiple Biomarker Responses using Effect Size
Summarize multiple biomarker responses of aquatic organisms to contaminants using Cliff ...
Download / Learn more Package Citations See dependency  

22,869

R Packages

195,887

Dependencies

63,882

Author Associations

22,870

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA