R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
DEET
View on CRAN: Click
here
Download and install DEET package within the R console
Install from CRAN:
install.packages("DEET")
Install from Github:
library("remotes")
install_github("cran/DEET")
Install by package version:
library("remotes")
install_version("DEET", "1.0.12")
Attach the package and use:
library("DEET")
Maintained by
Dustin Sokolowski
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.DEET . DEET results . DEET.pdf . Differential Expression Enrichment Tool (DEET) . DEET_1.0.12.tar.gz . DEET_1.0.12.zip . DEET_1.0.12.zip . DEET_1.0.12.zip . DEET_1.0.12.tgz . DEET_1.0.12.tgz . DEET_1.0.12.tgz . DEET_1.0.12.tgz . DEET_1.0.12.tgz . DEET_1.0.12.tgz . DEET archive . https://CRAN.R-project.org/package=DEET .
First Published: 2022-06-27
Latest Update: 2023-08-17
Description:
Abstract of Manuscript. Differential gene expression analysis using RNA sequencing (RNA-seq) data is a standard approach for making biological discoveries. Ongoing large-scale efforts to process and normalize publicly available gene expression data enable rapid and systematic reanalysis. While several powerful tools systematically process RNA-seq data, enabling their reanalysis, few resources systematically recompute differentially expressed genes (DEGs) generated from individual studies. We developed a robust differential expression analysis pipeline to recompute 3162 human DEG lists from The Cancer Genome Atlas, Genotype-Tissue Expression Consortium, and 142 studies within the Sequence Read Archive. After measuring the accuracy of the recomputed DEG lists, we built the Differential Expression Enrichment Tool (DEET), which enables users to interact with the recomputed DEG lists. DEET, available through CRAN and RShiny, systematically queries which of the recomputed DEG lists share similar genes, pathways, and TF targets to their own gene lists. DEET identifies relevant studies based on shared results with the user
How to cite:
Dustin Sokolowski (2022). DEET: Differential Expression Enrichment Tool. R package version 1.0.12, https://cran.r-project.org/web/packages/DEET. Accessed 29 Mar. 2025.
Previous versions and publish date:
Other packages that cited DEET R package
View DEET citation profile
Other R packages that DEET depends,
imports, suggests or enhances
Complete documentation for DEET
Functions, R codes and Examples using
the DEET R package
Some associated functions: DEET_Input_as_Reference . DEET_data_download . DEET_enrich . DEET_enrich_genesonly . DEET_enrichment_plot . DEET_example_data . DEET_feature_extract . DEET_feature_extract_example_matrix . DEET_feature_extract_example_response . DEET_plot_correlation . adjust_DE_cutoffs . example_DEET_enrich_input . proccess_and_plot_DEET_enrich .
Some associated R codes: DEET_Input_as_Reference.R . DEET_data_download.R . DEET_enrich.R . DEET_enrich_genesonly.R . DEET_enrichment_plot.R . DEET_example_data.R . DEET_feature_extract.R . DEET_feature_extract_example_matrix.R . DEET_feature_extract_example_response.R . DEET_plot_correlation.R . adjust_DE_cutoffs.R . example_DEET_enrich_input.R . proccess_and_plot_DEET_enrich.R . Full DEET package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
gglgbtq
Provides multiple palettes based on pride flags with tailored themes. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Laura Bakala (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
landmix
Non-parametric prediction of survival outcomes for mixture data that incorporates covariates and a l ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Layla Parast (view profile)
23,842
R Packages
207,311
Dependencies
64,420
Author Associations
23,781
Publication Badges
