Other packages > Find by keyword >

DEET  

Differential Expression Enrichment Tool
View on CRAN: Click here


Download and install DEET package within the R console
Install from CRAN:
install.packages("DEET")

Install from Github:
library("remotes")
install_github("cran/DEET")

Install by package version:
library("remotes")
install_version("DEET", "1.0.12")



Attach the package and use:
library("DEET")
Maintained by
Dustin Sokolowski
[Scholar Profile | Author Map]
First Published: 2022-06-27
Latest Update: 2023-08-17
Description:
Abstract of Manuscript. Differential gene expression analysis using RNA sequencing (RNA-seq) data is a standard approach for making biological discoveries. Ongoing large-scale efforts to process and normalize publicly available gene expression data enable rapid and systematic reanalysis. While several powerful tools systematically process RNA-seq data, enabling their reanalysis, few resources systematically recompute differentially expressed genes (DEGs) generated from individual studies. We developed a robust differential expression analysis pipeline to recompute 3162 human DEG lists from The Cancer Genome Atlas, Genotype-Tissue Expression Consortium, and 142 studies within the Sequence Read Archive. After measuring the accuracy of the recomputed DEG lists, we built the Differential Expression Enrichment Tool (DEET), which enables users to interact with the recomputed DEG lists. DEET, available through CRAN and RShiny, systematically queries which of the recomputed DEG lists share similar genes, pathways, and TF targets to their own gene lists. DEET identifies relevant studies based on shared results with the user
How to cite:
Dustin Sokolowski (2022). DEET: Differential Expression Enrichment Tool. R package version 1.0.12, https://cran.r-project.org/web/packages/DEET. Accessed 29 Mar. 2025.
Previous versions and publish date:
1.0.2 (2022-06-27 09:30), 1.0.5 (2022-07-19 10:00), 1.0.6 (2022-10-10 04:50), 1.0.7 (2022-12-15 00:20), 1.0.8 (2023-01-05 16:20), 1.0.10 (2023-05-01 19:00), 1.0.11 (2023-08-17 09:52)
Other packages that cited DEET R package
View DEET citation profile
Other R packages that DEET depends, imports, suggests or enhances
Complete documentation for DEET
Downloads during the last 30 days
02/2702/2803/0103/0203/0303/0403/0503/0603/0703/0803/0903/1003/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/27Downloads for DEET05101520253035404550TrendBars

Today's Hot Picks in Authors and Packages

gglgbtq  
Show Pride on 'ggplot2' Plots
Provides multiple palettes based on pride flags with tailored themes. ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
landmix  
Landmark Prediction for Mixture Data
Non-parametric prediction of survival outcomes for mixture data that incorporates covariates and a l ...
Download / Learn more Package Citations See dependency  

23,842

R Packages

207,311

Dependencies

64,420

Author Associations

23,781

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA