Other packages > Find by keyword >

DEET  

Differential Expression Enrichment Tool
View on CRAN: Click here


Download and install DEET package within the R console
Install from CRAN:
install.packages("DEET")

Install from Github:
library("remotes")
install_github("cran/DEET")

Install by package version:
library("remotes")
install_version("DEET", "1.0.12")



Attach the package and use:
library("DEET")
Maintained by
Dustin Sokolowski
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-06-27
Latest Update: 2024-06-26
Description:
Abstract of Manuscript. Differential gene expression analysis using RNA sequencing (RNA-seq) data is a standard approach for making biological discoveries. Ongoing large-scale efforts to process and normalize publicly available gene expression data enable rapid and systematic reanalysis. While several powerful tools systematically process RNA-seq data, enabling their reanalysis, few resources systematically recompute differentially expressed genes (DEGs) generated from individual studies. We developed a robust differential expression analysis pipeline to recompute 3162 human DEG lists from The Cancer Genome Atlas, Genotype-Tissue Expression Consortium, and 142 studies within the Sequence Read Archive. After measuring the accuracy of the recomputed DEG lists, we built the Differential Expression Enrichment Tool (DEET), which enables users to interact with the recomputed DEG lists. DEET, available through CRAN and RShiny, systematically queries which of the recomputed DEG lists share similar genes, pathways, and TF targets to their own gene lists. DEET identifies relevant studies based on shared results with the user
How to cite:
Dustin Sokolowski (2022). DEET: Differential Expression Enrichment Tool. R package version 1.0.12, https://cran.r-project.org/web/packages/DEET. Accessed 08 Oct. 2026.
Previous versions and publish date:
1.0.2 (2022-06-27 09:30), 1.0.5 (2022-07-19 10:00), 1.0.6 (2022-10-10 04:50), 1.0.7 (2022-12-15 00:20), 1.0.8 (2023-01-05 16:20), 1.0.10 (2023-05-01 19:00), 1.0.11 (2023-08-17 09:52), (2026-07-09 08:01)
Other packages that cited DEET R package
View DEET citation profile
Other R packages that DEET depends, imports, suggests or enhances
Complete documentation for DEET
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

dineR  
Differential Network Estimation in R
An efficient and convenient set of functions to perform differential network estimation through the ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
metafor  
Meta-Analysis Package for R
A comprehensive collection of functions for conducting meta-analyses in R. The package includes func ...
Download / Learn more Package Citations See dependency  
abc.data  
Data Only: Tools for Approximate Bayesian Computation (ABC)
Contains data which are used by functions of the 'abc' package. ...
Download / Learn more Package Citations See dependency  
climwin  
Climate Window Analysis
Contains functions to detect and visualise periods of climate sensitivity (climate windows) for a g ...
Download / Learn more Package Citations See dependency  
colorfindr  
Extract Colors from Windows BMP, JPEG, PNG, TIFF, and SVG Format Images
Extracts colors from various image types, returns customized reports and plots treemaps and 3D scat ...
Download / Learn more Package Citations See dependency  

28,905

R Packages

247,686

Dependencies

76,495

Author Associations

28,906

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA