Other packages > Find by keyword >

DAISIE  

Dynamical Assembly of Islands by Speciation, Immigration and Extinction
View on CRAN: Click here


Download and install DAISIE package within the R console
Install from CRAN:
install.packages("DAISIE")

Install from Github:
library("remotes")
install_github("cran/DAISIE")

Install by package version:
library("remotes")
install_version("DAISIE", "4.6.0")



Attach the package and use:
library("DAISIE")
Maintained by
Rampal S. Etienne
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-05-21
Latest Update: 2025-06-01
Description:
Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction. See Valente et al. (2015) .
How to cite:
Rampal S. Etienne (2015). DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. R package version 4.6.0, https://cran.r-project.org/web/packages/DAISIE. Accessed 27 Aug. 2026.
Previous versions and publish date:
1.0.1 (2015-06-03 08:11), 1.0.2 (2015-09-29 17:46), 1.0 (2015-05-21 09:40), 1.2 (2016-11-14 11:32), 1.4 (2017-04-13 19:50), 3.0.0 (2020-08-14 12:12), 3.0.1 (2020-08-26 12:00), 4.2.0 (2022-06-02 13:30), 4.3.1 (2023-02-13 10:40), 4.4.0 (2023-04-03 00:10), 4.4.1 (2023-10-22 01:10), 4.5.0 (2025-02-05 14:20), 4.6.0 (2025-06-01 23:20), (2026-07-31 02:01)
Other packages that cited DAISIE R package
View DAISIE citation profile
Other R packages that DAISIE depends, imports, suggests or enhances
Complete documentation for DAISIE
Functions, R codes and Examples using the DAISIE R package
Some associated functions: Bats_GreaterAntilles . Biwa_datalist . DAISIE-package . DAISIE_CS_max_steps . DAISIE_ExpEIN . DAISIE_IC . DAISIE_IW_num_threads . DAISIE_ML . DAISIE_ML1 . DAISIE_ML2 . DAISIE_ML4 . DAISIE_ML_IW . DAISIE_MW_ML . DAISIE_ONEcolonist . DAISIE_SR_ML . DAISIE_SR_loglik_CS . DAISIE_SR_sim . DAISIE_SR_sim_core . DAISIE_abm_factor . DAISIE_calc_sumstats_pcrates . DAISIE_convert_to_classic_plot . DAISIE_convertprobdist . DAISIE_create_island . DAISIE_dataprep . DAISIE_extract_stt_median . DAISIE_format_CS . DAISIE_format_CS_full_stt . DAISIE_format_CS_sampled_stt . DAISIE_format_GW . DAISIE_format_IW . DAISIE_format_IW_full_stt . DAISIE_format_IW_sampled_stt . DAISIE_loglik_CS . DAISIE_loglik_IW . DAISIE_loglik_integrand . DAISIE_loglik_integrate . DAISIE_make_archipelago . DAISIE_make_global . DAISIE_margprobdist . DAISIE_nonoceanic_spec . DAISIE_numcol . DAISIE_plot_age_diversity . DAISIE_plot_area . DAISIE_plot_cladogenesis . DAISIE_plot_comparison_stts . DAISIE_plot_extinction . DAISIE_plot_immigration . DAISIE_plot_input . DAISIE_plot_island . DAISIE_plot_pc_rates . DAISIE_plot_sims . DAISIE_plot_stt . DAISIE_probdist . DAISIE_sample_event_cr . DAISIE_sample_event_time_dep . DAISIE_sample_event_trait_dep . DAISIE_sim . DAISIE_sim_MW . DAISIE_sim_core_cr . DAISIE_sim_core_cr_shift . DAISIE_sim_core_time_dep . DAISIE_sim_core_trait_dep . DAISIE_sim_cr_cs . DAISIE_sim_cr_gw . DAISIE_sim_cr_iw . DAISIE_sim_cr_shift . DAISIE_sim_min_type2 . DAISIE_sim_relaxed_rate . DAISIE_sim_time_dep . DAISIE_sim_time_dep_cs . DAISIE_sim_time_dep_gw . DAISIE_sim_time_dep_iw . DAISIE_sim_trait_dep . DAISIE_sim_update_state_cr . DAISIE_sim_update_state_time_dep . DAISIE_sim_update_state_trait_dep . Galapagos_datalist . Galapagos_datalist_2types . Galapagos_datatable . Macaronesia_datalist . NewZealand_birds_datalist . add_column_to_dataframe . archipelago_data . archipelagos41 . are_area_pars . are_hyper_pars . are_max_rates . are_max_rates_gt_rates . are_rates . are_trait_pars . calc_Abeta . calc_next_timeval . calc_next_timeval_shift . calc_peak . countspecies . create_CS_version . create_area_pars . create_full_CS_stt . create_hyper_pars . create_pars . create_trait_pars . daisie_odeint_cs . daisie_odeint_iw . default_params_doc . frogs_datalist . frogs_datatable . get_ana_rate . get_clado_rate . get_clado_rate_per_capita . get_ext_rate . get_ext_rate_per_capita . get_global_max_area . get_global_min_area . get_immig_rate . get_immig_rate_per_capita . get_trans_rate . integral_peak . is_island_ontogeny_input . is_sea_level_input . is_simulation_outputs . island_area . island_area_vector . islands_10reps_RAW . islands_1type_1000reps . islands_2types_1000reps . remove_empty_elements . rho . sample_relaxed_rate . stac_table . transform_gamma_pars . translate_island_ontogeny . translate_sea_level . update_max_rates . update_rates . 
Some associated R codes: DAISIE-package.R . DAISIE_ExpEIN.R . DAISIE_IC.R . DAISIE_ML1.R . DAISIE_ML2.R . DAISIE_ML4.R . DAISIE_ML_CS.R . DAISIE_ML_IW.R . DAISIE_MW_ML.R . DAISIE_ONEcolonist.R . DAISIE_PEI.R . DAISIE_SR_ML_CS.R . DAISIE_SR_loglik_CS.R . DAISIE_SR_sim.R . DAISIE_SR_sim_core.R . DAISIE_check_format.R . DAISIE_create_island.R . DAISIE_data.R . DAISIE_dataprep.R . DAISIE_extract_stt_median.R . DAISIE_format_CS.R . DAISIE_format_CS_full_stt.R . DAISIE_format_CS_sampled_stt.R . DAISIE_format_CS_trait.R . DAISIE_format_GW.R . DAISIE_format_IW.R . DAISIE_format_IW_full_stt.R . DAISIE_format_IW_sampled_stt.R . DAISIE_loglik_CS.R . DAISIE_loglik_CS_time.R . DAISIE_loglik_IW.R . DAISIE_loglik_IW0.R . DAISIE_loglik_high_lambda.R . DAISIE_loglik_integrate.R . DAISIE_make_archipelago.R . DAISIE_max_rates.R . DAISIE_plot_age_diversity.R . DAISIE_plot_comparison_stts.R . DAISIE_plot_input.R . DAISIE_plot_island.R . DAISIE_plot_params.R . DAISIE_plot_pc_rates.R . DAISIE_plot_sims.R . DAISIE_plot_stt.R . DAISIE_rates.R . DAISIE_sample_event_cr.R . DAISIE_sample_event_time_dep.R . DAISIE_sample_event_trait_dep.R . DAISIE_sim_MW.R . DAISIE_sim_core_cr.R . DAISIE_sim_core_cr_shift.R . DAISIE_sim_core_time_dep.R . DAISIE_sim_core_trait_dep.R . DAISIE_sim_cr.R . DAISIE_sim_cr_cs.R . DAISIE_sim_cr_gw.R . DAISIE_sim_cr_iw.R . DAISIE_sim_cr_shift.R . DAISIE_sim_min_type2.R . DAISIE_sim_relaxed_rate.R . DAISIE_sim_time_dep.R . DAISIE_sim_time_dep_cs.R . DAISIE_sim_time_dep_gw.R . DAISIE_sim_time_dep_iw.R . DAISIE_sim_trait_dep.R . DAISIE_sim_update_state_cr.R . DAISIE_sim_update_state_time_dep.R . DAISIE_sim_update_state_trait_dep.R . DAISIE_sumstats_rates.R . DAISIE_utils.R . RcppExports.R . create_pars.R . default_params_doc.R . remove_empty_elements.R .  Full DAISIE package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

ROI.plugin.qpoases  
'qpOASES' Plugin for the 'R' Optimization Infrastructure
Enhances the 'R' Optimization Infrastructure ('ROI') package with the quadratic solver 'qpOASES'. M ...
Download / Learn more Package Citations See dependency  
risksetROC  
Riskset ROC Curve Estimation from Censored Survival Data
Compute time-dependent Incident/dynamic accuracy measures (ROC curve, AUC, integrated AUC )from cen ...
Download / Learn more Package Citations See dependency  
IntervalQuestionStat  
Tools to Deal with Interval-Valued Responses in Questionnaires
A user-friendly toolbox for doing the statistical analysis of interval-valued responses in question ...
Download / Learn more Package Citations See dependency  
lmmpar  
Parallel Linear Mixed Model
Embarrassingly Parallel Linear Mixed Model calculations spread across local cores which repeat until ...
Download / Learn more Package Citations See dependency  
robustX  
'eXtra' / 'eXperimental' Functionality for Robust Statistics
Robustness -- 'eXperimental', 'eXtraneous', or 'eXtraordinary' Functionality for Robust Statistics. ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA