Other packages > Find by keyword >

CytOpT  

Optimal Transport for Gating Transfer in Cytometry Data with Domain Adaptation
View on CRAN: Click here


Download and install CytOpT package within the R console
Install from CRAN:
install.packages("CytOpT")

Install from Github:
library("remotes")
install_github("cran/CytOpT")

Install by package version:
library("remotes")
install_version("CytOpT", "0.9.4")



Attach the package and use:
library("CytOpT")
Maintained by
Boris Hejblum
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-02-07
Latest Update: 2022-02-09
Description:
Supervised learning from a source distribution (with known segmentation into cell sub-populations) to fit a target distribution with unknown segmentation. It relies regularized optimal transport to directly estimate the different cell population proportions from a biological sample characterized with flow cytometry measurements. It is based on the regularized Wasserstein metric to compare cytometry measurements from different samples, thus accounting for possible mis-alignment of a given cell population across sample (due to technical variability from the technology of measurements). Supervised learning technique based on the Wasserstein metric that is used to estimate an optimal re-weighting of class proportions in a mixture model Details are presented in Freulon P, Bigot J and Hejblum BP (2021) .
How to cite:
Boris Hejblum (2022). CytOpT: Optimal Transport for Gating Transfer in Cytometry Data with Domain Adaptation. R package version 0.9.4, https://cran.r-project.org/web/packages/CytOpT. Accessed 04 Jan. 2025.
Previous versions and publish date:
0.9.2 (2022-02-07 10:30)
Other packages that cited CytOpT R package
View CytOpT citation profile
Other R packages that CytOpT depends, imports, suggests or enhances
Complete documentation for CytOpT
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

NestedMenu  
A Nested Menu Widget for 'Shiny' Applications
Provides a nested menu widget for usage in 'Shiny' applications. This is useful for hierarchical ch ...
Download / Learn more Package Citations See dependency  
EffectLiteR  
Average and Conditional Effects
Use structural equation modeling to estimate average and conditional effects of a treatment variabl ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
epubr  
Read EPUB File Metadata and Text
Provides functions supporting the reading and parsing of internal e-book content from EPUB files. T ...
Download / Learn more Package Citations See dependency  
qualmap  
Opinionated Approach for Digitizing Semi-Structured Qualitative GIS Data
Provides a set of functions for taking qualitative GIS data, hand drawn on a map, and converting it ...
Download / Learn more Package Citations See dependency  
VARMER  
Variational Merging
A new mathematical formulation to merge observed data with gridded images of environmental variables ...
Download / Learn more Package Citations See dependency  

23,440

R Packages

202,297

Dependencies

63,567

Author Associations

23,434

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA