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CrossExpression  

Cross-Expression Analysis of Spatial Transcriptomics Data
View on CRAN: Click here


Download and install CrossExpression package within the R console
Install from CRAN:
install.packages("CrossExpression")

Install from Github:
library("remotes")
install_github("cran/CrossExpression")

Install by package version:
library("remotes")
install_version("CrossExpression", "1.0.0")



Attach the package and use:
library("CrossExpression")
Maintained by
Ameer Sarwar
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-07-28
Latest Update: 2025-07-28
Description:
Analyzes spatial transcriptomic data using cells-by-genes and cell location matrices to find gene pairs that coordinate their expression between spatially adjacent cells. It enables quantitative analysis and graphical assessment of these cross-expression patterns. See Sarwar et al. (2025) <doi:10.1101/2024.09.17.613579> and <https://github.com/gillislab/CrossExpression/> for more details.
How to cite:
Ameer Sarwar (2025). CrossExpression: Cross-Expression Analysis of Spatial Transcriptomics Data. R package version 1.0.0, https://cran.r-project.org/web/packages/CrossExpression. Accessed 03 Oct. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited CrossExpression R package
View CrossExpression citation profile
Other R packages that CrossExpression depends, imports, suggests or enhances
Complete documentation for CrossExpression
Functions, R codes and Examples using the CrossExpression R package
Full CrossExpression package functions and examples
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