Other packages > Find by keyword >

CpGassoc  

Association Between Methylation and a Phenotype of Interest
View on CRAN: Click here


Download and install CpGassoc package within the R console
Install from CRAN:
install.packages("CpGassoc")

Install from Github:
library("remotes")
install_github("cran/CpGassoc")

Install by package version:
library("remotes")
install_version("CpGassoc", "2.70")



Attach the package and use:
library("CpGassoc")
Maintained by
R Barfield
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-05-22
Latest Update: 2017-05-30
Description:
Is designed to test for association between methylation at CpG sites across the genome and a phenotype of interest, adjusting for any relevant covariates. The package can perform standard analyses of large datasets very quickly with no need to impute the data. It can also handle mixed effects models with chip or batch entering the model as a random intercept. Also includes tools to apply quality control filters, perform permutation tests, and create QQ plots, manhattan plots, and scatterplots for individual CpG sites.
How to cite:
R Barfield (2012). CpGassoc: Association Between Methylation and a Phenotype of Interest. R package version 2.70, https://cran.r-project.org/web/packages/CpGassoc. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.00 (2012-05-22 07:54), 1.1 (2012-05-26 16:02), 1.3 (2012-07-18 07:31), 2.0 (2013-09-16 23:16), 2.11 (2014-01-10 20:43), 2.50 (2015-01-28 20:23), 2.55 (2016-01-29 22:22), 2.60 (2017-05-31 00:23)
Other packages that cited CpGassoc R package
View CpGassoc citation profile
Other R packages that CpGassoc depends, imports, suggests or enhances
Complete documentation for CpGassoc
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

Rfast2  
A Collection of Efficient and Extremely Fast R Functions II
A collection of fast statistical and utility functions for data analysis. Functions for regression, ...
Download / Learn more Package Citations See dependency  
composits  
Compositional, Multivariate and Univariate Time Series Outlier Ensemble
A compositional multivariate and univariate time series outlier ensemble.It uses the four R packages ...
Download / Learn more Package Citations See dependency  
dmlalg  
Double Machine Learning Algorithms
Implementation of double machine learning (DML) algorithms in R, based on Emmenegger and Buehlmann ...
Download / Learn more Package Citations See dependency  
LOGANTree  
Tree-Based Models for the Analysis of Log Files from Computer-Based Assessments
Enables researchers to model log-file data from computer-based assessments using machine-learning te ...
Download / Learn more Package Citations See dependency  
Maintainer: Qi Qin (view profile)
wordspace  
Distributional Semantic Models in R
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA