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Compositional

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Compositional Data Analysis

View on CRAN: Click here

Download and install Compositional package within the R console
Install from CRAN:

 install.packages("Compositional")

Install from Github:

 library("remotes")

                        install_github("cran/Compositional")

Install by package version:

 library("remotes")

                        install_version("Compositional", "7.2")

Attach the package and use:

 library("Compositional")

Maintained by
Michail Tsagris
[Scholar Profile | Author Map]

All associated links for this package

First Published: 2016-02-09

Latest Update: 2023-06-29

Description:

Regression, classification, contour plots, hypothesis testing and fitting of distributions for compositional data are some of the functions included. We further include functions for percentages (or proportions). The standard textbook for such data is John Aitchison's (1986) "The statistical analysis of compositional data". Relevant papers include: a) Tsagris M.T., Preston S. and Wood A.T.A. (2011). "A data-based power transformation for compositional data". Fourth International International Workshop on Compositional Data Analysis. b) Tsagris M. (2014). "The k-NN algorithm for compositional data: a revised approach with and without zero values present". Journal of Data Science, 12(3): 519--534. . c) Tsagris M. (2015). "A novel, divergence based, regression for compositional data". Proceedings of the 28th Panhellenic Statistics Conference, 15-18 April 2015, Athens, Greece, 430--444. . d) Tsagris M. (2015). "Regression analysis with compositional data containing zero values". Chilean Journal of Statistics, 6(2): 47--57. . e) Tsagris M., Preston S. and Wood A.T.A. (2016). "Improved supervised classification for compositional data using the alpha-transformation". Journal of Classification, 33(2): 243--261. . f) Tsagris M., Preston S. and Wood A.T.A. (2017). "Nonparametric hypothesis testing for equality of means on the simplex". Journal of Statistical Computation and Simulation, 87(2): 406--422. . g) Tsagris M. and Stewart C. (2018). "A Dirichlet regression model for compositional data with zeros". Lobachevskii Journal of Mathematics, 39(3): 398--412. . h) Alenazi A. (2019). "Regression for compositional data with compositional data as predictor variables with or without zero values". Journal of Data Science, 17(1): 219--238. . i) Tsagris M. and Stewart C. (2020). "A folded model for compositional data analysis". Australian and New Zealand Journal of Statistics, 62(2): 249--277. . j) Alenazi A. (2021). Alenazi, A. (2023). "A review of compositional data analysis and recent advances". Communications in Statistics--Theory and Methods, 52(16): 5535--5567. . k) Alenazi A.A. (2022). "f-divergence regression models for compositional data". Pakistan Journal of Statistics and Operation Research, 18(4): 867--882. . l) Tsagris M. and Stewart C. (2022). "A Review of Flexible Transformations for Modeling Compositional Data". In Advances and Innovations in Statistics and Data Science, pp. 225--234. . m) Tsagris M., Alenazi A. and Stewart C. (2023). "Flexible non-parametric regression models for compositional response data with zeros". Statistics and Computing, 33(106). . n) Tsagris. M. (2024). "Constrained least squares simplicial-simplicial regression". .

How to cite:

Michail Tsagris (2016). Compositional: Compositional Data Analysis. R package version 7.2, https://cran.r-project.org/web/packages/Compositional. Accessed 29 Jan. 2025.

Previous versions and publish date:

1.0 (2016-02-09 14:36), 1.1 (2016-02-16 13:48), 1.2 (2016-04-01 10:45), 1.3 (2016-05-27 15:51), 1.4 (2016-07-08 11:34), 1.5 (2016-07-10 15:32), 1.6 (2016-08-01 14:55), 1.8 (2016-08-05 15:11), 2.0 (2016-10-11 12:42), 2.2 (2016-12-13 15:33), 2.3 (2017-02-28 10:58), 2.4 (2017-05-29 18:17), 2.5 (2017-07-26 23:32), 2.6 (2017-10-07 16:30), 2.7 (2017-11-23 22:02), 2.8 (2018-01-14 16:39), 2.9 (2018-03-07 22:16), 3.0 (2018-05-24 10:41), 3.1 (2018-06-04 12:27), 3.2 (2018-12-17 14:20), 3.3 (2019-01-13 12:50), 3.4 (2019-03-12 23:47), 3.5 (2019-06-18 17:10), 3.6 (2019-11-23 10:30), 3.7 (2020-02-25 20:30), 3.8 (2020-03-16 19:10), 3.9 (2020-07-05 20:40), 4.1 (2020-09-19 08:40), 4.2 (2020-11-12 09:00), 4.3 (2021-01-19 10:40), 4.4 (2021-02-22 19:00), 4.5 (2021-03-23 15:10), 4.6 (2021-04-27 17:40), 4.7 (2021-05-13 08:22), 4.8 (2021-07-08 18:20), 4.9 (2021-09-02 23:11), 5.0 (2021-10-06 09:20), 5.2 (2021-11-08 20:10), 5.3 (2021-12-11 19:40), 5.4 (2022-02-07 22:00), 5.5 (2022-03-23 23:30), 5.6 (2022-05-11 17:40), 5.7 (2022-06-22 15:10), 5.8 (2022-07-08 00:30), 5.9 (2022-10-03 16:40), 6.0 (2022-11-12 01:50), 6.1 (2023-01-08 22:10), 6.2 (2023-03-13 19:30), 6.3 (2023-06-29 21:10), 6.4 (2023-09-15 18:14), 6.5 (2023-10-23 11:20), 6.6 (2023-12-09 12:00), 6.7 (2024-02-29 14:22), 6.8 (2024-04-01 16:40), 6.9 (2024-07-08 18:30), 7.0 (2024-08-23 10:40), 7.1 (2024-10-09 11:50), 7.2 (2024-12-04 17:00)

Other packages that cited Compositional R package

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Other R packages that Compositional depends, imports, suggests or enhances

View Compositional dependency map

Complete documentation for Compositional

View documentation PDF

Functions, R codes and Examples using the Compositional R package

Some associated functions: Compositional-package . a.est . acor . acor.tune . aeqdist.etest . ait . ait.test . aitdist . akern.reg . akernreg.tune . aknn.reg . aknnreg.tune . alfa.contour . alfa.knn.reg . alfa.mds . alfa.mix.norm . alfa.nb . alfa . alfa.pca . alfa.pcr . alfa.profile . alfa.rda . alfa.reg . alfa.ridge . alfa.tune . alfadist . alfainv . alfaknnreg.tune . alfanb.tune . alfann . alfapcr.tune . alfarda.tune . alfareg.tune . alfaridge.plot . alfaridge.tune . alpha.mle . alr.all . alr . bc . beta.est . beta.reg . bic.alfamixnorm . bic.mixcompnorm . bivt.contour . choose.pc . colbeta.mle . comp.den . comp.kern . comp.kerncontour . comp.knn . comp.nb . comp.ppr . comp.reg . comp.test . compbn . compknn.tune . compnorm.contour . compppr.tune . cv.comp.reg . cv.compnb . cv.dda . cv.lasso.compreg . cv.lasso.klcompreg . cv.olscompcomp . cv.tflr . dda . ddiri . dfd . dfolded . dgendiri . diri.contour . diri.est . diri.nr . diri.reg . dirimean.test . divergence . dmix.compnorm . dmixdiri . eel.test1 . eel.test2 . el.test1 . el.test2 . esov.mds . esov . fd.contour . fd.est . folded.contour . fp . frechet . frechet2 . gendiri.contour . glm.pcr . glmpcr.tune . green . hd.meantest2 . helm . hotel1T2 . hotel2T2 . ice.kernreg . ice.pprcomp . james . kent.contour . kern.reg . kernreg.tune . kl.alfapcr . kl.compreg . kl.compreg2 . kl.diri.normal . kl.diri . klalfapcr.tune . lasso.compreg . lasso.klcompreg . lassocoef.plot . lc.glm . lc.reg . lc.reg2 . lcreg.aov . logpca . makefolds . maov . maovjames . mix.compnorm.contour . mix.compnorm . mixdiri.contour . mkde . mkde.tune . mlr . multivreg . multivt . ols.compcomp . ols.compreg . ols.prop.reg . pcc . perturbation . pivot . pow . pprcomp . pprcomp.tune . probout . propreg . rbeta1 . rcompnorm . rcompsn . rcompt . rda . rda.tune . rdiri . rfd . rfolded . rgendiri . ridge.plot . ridge.reg . ridge.tune . rmixcomp . rmixdiri . skewnorm.contour . spatmed.reg . sym.test . ternary . ternary.reg . tflr . totvar . ulc.glm . ulc.reg . ulc.reg2 . unitweib.reg . zad.est . zadr . zeroreplace .
Some associated R codes: a.est.R . a.mle.R . acor.R . acor.tune.R . aeqdist.etest.R . ait.R . ait.knn.R . ait.test.R . aitdist.R . aitdista.R . aitknn.tune.R . akern.reg.R . akernreg.tune.R . aknn.reg.R . aknnreg.tune.R . alef.R . alfa.R . alfa.contour.R . alfa.fda.R . alfa.knn.R . alfa.knn.reg.R . alfa.mds.R . alfa.mix.norm.R . alfa.nb.R . alfa.pca.R . alfa.pcr.R . alfa.profile.R . alfa.rda.R . alfa.reg.R . alfa.ridge.R . alfa.tune.R . alfadist.R . alfadista.R . alfafda.tune.R . alfainv.R . alfaknn.tune.R . alfaknnreg.tune.R . alfanb.tune.R . alfann.R . alfapcr.tune.R . alfarda.tune.R . alfareg.tune.R . alfaridge.plot.R . alfaridge.tune.R . alpha.mle.R . alr.R . alr.all.R . alrinv.R . bc.R . beta.est.R . beta.reg.R . bic.alfamixnorm.R . bic.mixcompnorm.R . bivt.contour.R . choose.pc.R . colbeta.est.R . collogitnorm.est.R . colsimplex.est.R . colunitweibull.est.R . comp.den.R . comp.kern.R . comp.kerncontour.R . comp.knn.R . comp.nb.R . comp.ppr.R . comp.reg.R . comp.test.R . compbn.R . compknn.tune.R . compnorm.contour.R . compppr.tune.R . cv.comp.reg.R . cv.compnb.R . cv.dda.R . cv.lasso.compreg.R . cv.lasso.klcompreg.R . cv.olscompcomp.R . cv.tflr.R . dda.R . ddiri.R . dfd.R . dfolded.R . dgendiri.R . diri.contour.R . diri.est.R . diri.nr.R . diri.reg.R . diri.reg2.R . dirimean.test.R . divergence.R . dmix.compnorm.R . dmixdiri.R . eel.test1.R . eel.test2.R . el.test1.R . el.test2.R . es.R . esov.R . esov.mds.R . esova.R . fd.contour.R . fd.est.R . folded.contour.R . fp.R . frechet.R . frechet2.R . gendiri.contour.R . glm.pcr.R . glmpcr.tune.R . green.R . hd.meantest2.R . helling.prop.reg.R . helm.R . hotel1T2.R . hotel2T2.R . hsecant01.est.R . ibeta.est.R . ice.kernreg.R . ice.pprcomp.R . james.R . js.compreg.R . kent.contour.R . kern.reg.R . kernreg.tune.R . kl.alfapcr.R . kl.compreg.R . kl.compreg2.R . kl.diri.R . kl.diri.normal.R . klalfapcr.tune.R . klcompreg.boot.R . kumar.est.R . lasso.compreg.R . lasso.klcompreg.R . lassocoef.plot.R . lc.glm.R . lc.reg.R . lc.reg2.R . lcreg.aov.R . logitnorm.est.R . logpca.R . makefolds.R . maov.R . maovjames.R . mix.compnorm.R . mix.compnorm.contour.R . mixdiri.contour.R . mixreg.R . mkde.R . mkde.tune.R . mlr.R . mlrinv.R . multinompcr.tune.R . multivreg.R . multivt.R . ols.compcomp.R . ols.compreg.R . ols.prop.reg.R . pcc.R . pcr.R . pcr.tune.R . perturbation.R . pivot.R . pivotinv.R . pow.R . pprcomp.R . pprcomp.tune.R . probout.R . propreg.R . propregs.R . rbeta1.R . rcompnorm.R . rcompsn.R . rcompt.R . rda.R . rda.tune.R . rdiri.R . rfd.R . rfolded.R . rgendiri.R . ridge.plot.R . ridge.reg.R . ridge.tune.R . rlogitnorm.R . rmixcomp.R . rmixdiri.R . runitweibull.R . simplex.est.R . skewnorm.contour.R . spatmed.reg.R . sym.test.R . symkl.compreg.R . ternary.R . ternary.reg.R . tflr.R . totvar.R . tv.compreg.R . ulc.glm.R . ulc.reg.R . ulc.reg2.R . unitweib.reg.R . unitweibull.est.R . zad.est.R . zadr.R . zeroreplace.R . zilogitnorm.est.R . Full Compositional package functions and examples

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