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CoalescentPhylo  

Phylogenetics via Root Distances Method Under the Coalescent
View on CRAN: Click here


Download and install CoalescentPhylo package within the R console
Install from CRAN:
install.packages("CoalescentPhylo")

Install from Github:
library("remotes")
install_github("cran/CoalescentPhylo")

Install by package version:
library("remotes")
install_version("CoalescentPhylo", "0.1.0")



Attach the package and use:
library("CoalescentPhylo")
Maintained by
Arindam RoyChoudhury
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All associated links for this package
First Published: 2026-05-27
Latest Update: 2026-05-27
Description:
Estimates phylogenetic trees from allele count data using the root distance method under the Coalescent Model. Given a matrix of allele counts across taxa and loci, the package estimates pairwise root distances under the Coalescent Model using maximum likelihood estimation. Then, it estimates a labeled phylogenetic tree from the estimated root distances. See Peng et al. (2021) <doi:10.1016/j.ympev.2021.107142>.
How to cite:
Arindam RoyChoudhury (2026). CoalescentPhylo: Phylogenetics via Root Distances Method Under the Coalescent. R package version 0.1.0, https://cran.r-project.org/web/packages/CoalescentPhylo. Accessed 26 Aug. 2026.
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