R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
ClusTCR2
View on CRAN: Click
here
Download and install ClusTCR2 package within the R console
Install from CRAN:
install.packages("ClusTCR2")
Install from Github:
library("remotes")
install_github("cran/ClusTCR2") Install by package version:
library("remotes")
install_version("ClusTCR2", "1.7.3.01") Attach the package and use:
library("ClusTCR2")
Maintained by
Kerry A. Mullan
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-05-16
Latest Update: 2024-05-16
Description:
Enhancing T cell receptor (TCR) sequence analysis, 'ClusTCR2', based on 'ClusTCR' python program, leverages Hamming distance to compare the complement-determining region three (CDR3) sequences for sequence similarity, variable gene (V gene) and length. The second step employs the Markov Cluster Algorithm to identify clusters within an undirected graph, providing a summary of amino acid motifs and matrix for generating network plots. Tailored for single-cell RNA-seq data with integrated TCR-seq information, 'ClusTCR2' is integrated into the Single Cell TCR and Expression Grouped Ontologies (STEGO) R application or 'STEGO.R'. See the two publications for more details. Sebastiaan Valkiers, Max Van Houcke, Kris Laukens, Pieter Meysman (2021) <doi:10.1093/bioinformatics/btab446>, Kerry A. Mullan, My Ha, Sebastiaan Valkiers, Nicky de Vrij, Benson Ogunjimi, Kris Laukens, Pieter Meysman (2023) <doi:10.1101/2023.09.27.559702>.
How to cite:
Kerry A. Mullan (2024). ClusTCR2: Identifying Similar T Cell Receptor Hyper-Variable Sequences with 'ClusTCR2'. R package version 1.7.3.01, https://cran.r-project.org/web/packages/ClusTCR2. Accessed 07 Mar. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited ClusTCR2 R package
View ClusTCR2 citation profile
Other R packages that ClusTCR2 depends,
imports, suggests or enhances
Complete documentation for ClusTCR2
Functions, R codes and Examples using
the ClusTCR2 R package
Full ClusTCR2 package
functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
lmSubsets
Exact and approximation algorithms for variable-subset
selection in ordinary linear regression mode ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Marc Hofmann (view profile)
portalr
Download and generate summaries for the rodent,
plant, ant, and weather data from the Portal Projec ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Glenda M. Yenni (view profile)
SAMtool
Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Quang Huynh (view profile)
testDriveR
Provides data sets for teaching statistics and data science courses. It includes a sample of data f ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Christopher Prener (view profile)
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
ReviewR
A portable Shiny tool to explore patient-level electronic health record data
and perform chart revi ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: David Mayer (view profile)
26,264
R Packages
223,360
Dependencies
70,376
Author Associations
26,265
Publication Badges
