R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
ClassifyITS
View on CRAN: Click
here
Download and install ClassifyITS package within the R console
Install from CRAN:
install.packages("ClassifyITS")
Install from Github:
library("remotes")
install_github("cran/ClassifyITS") Install by package version:
library("remotes")
install_version("ClassifyITS", "0.1.0") Attach the package and use:
library("ClassifyITS")
Maintained by
Quinn Moon
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-04-09
Latest Update: 2026-04-09
Description:
Fungi are ubiquitous in Earth's wonderfully diverse ecosystems. The 'ClassifyITS' package aids in the taxonomic classification of environmental internal transcribed spacer (ITS) short-read barcoding data. Unlike previous methods, it employs taxon-specific e-value and percent identity cutoffs at each taxonomic rank from kingdom to species. The package takes a conservative approach and outputs both graphics and user-friendly files to help users manually inspect fungal operational taxonomic units (OTUs) that fail classification at relevant levels (e.g., Phylum). 'ClassifyITS' is based on taxonomic cutoff criteria from "The Global Soil Mycobiome consortium dataset for boosting fungal diversity research" (Fungal Diversity, Tedersoo, 2021, <doi:10.1007/s13225-021-00493-7>) and "Best practices in metabarcoding of fungi: From experimental design to results" (Molecular Ecology, Tedersoo, 2022, <doi:10.1111/mec.16460>).
How to cite:
Quinn Moon (2026). ClassifyITS: Fungal Assignment Pipeline. R package version 0.1.0, https://cran.r-project.org/web/packages/ClassifyITS. Accessed 28 Jul. 2026.
Previous versions and publish date:
0.1.0 (2026-04-09 17:20), (2026-07-09 08:00)
Other packages that cited ClassifyITS R package
View ClassifyITS citation profile
Other R packages that ClassifyITS depends,
imports, suggests or enhances
Complete documentation for ClassifyITS
Functions, R codes and Examples using
the ClassifyITS R package
Full ClassifyITS package
functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
NPBayesImputeCat
These routines create multiple imputations of missing at random categorical data, and create multipl ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Jingchen Hu (view profile)
daqapo
Provides a variety of methods to identify data quality issues in process-oriented data, which are us ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Niels Martin (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
openintro
Supplemental functions and data for 'OpenIntro' resources, which
includes open-source textbooks and ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Mine Çetinkaya-Rundel (view profile)
ExplodeLayout
Current layout algorithms such as Kamada Kawai do not take into consideration disjoint clusters in a ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Weibin Zhang (view profile)
textmineR
An aid for text mining in R, with a syntax that should be familiar to experienced R users. Provides ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Tommy Jones (view profile)
27,987
R Packages
239,283
Dependencies
74,234
Author Associations
27,988
Publication Badges
