R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
Claddis
View on CRAN: Click
here
Download and install Claddis package within the R console
Install from CRAN:
install.packages("Claddis")
Install from Github:
library("remotes")
install_github("cran/Claddis") Install by package version:
library("remotes")
install_version("Claddis", "0.7.0") Attach the package and use:
library("Claddis")
Maintained by
Graeme T. Lloyd
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-04-28
Latest Update: 2024-09-03
Description:
Measures morphological diversity from discrete character data and
estimates evolutionary tempo on phylogenetic trees. Imports morphological
data from #NEXUS (Maddison et al. (1997) )
format with read_nexus_matrix(), and writes to both #NEXUS and TNT format
(Goloboff et al. (2008) ). Main
functions are test_rates(), which implements AIC and likelihood
ratio tests for discrete character rates introduced across Lloyd et al.
(2012) , Brusatte et al. (2014)
, Close et al. (2015)
, and Lloyd (2016) ,
and MatrixDistances(), which implements multiple discrete character
distance metrics from Gower (1971) , Wills (1998)
, Lloyd (2016) , and
Hopkins and St John (2018) . This also includes
the GED correction from Lehmann et al. (2019) .
Multiple functions implement morphospace plots:
plot_chronophylomorphospace() implements Sakamoto and Ruta (2012)
, plot_morphospace() implements Wills et
al. (1994) , plot_changes_on_tree()
implements Wang and Lloyd (2016) , and
plot_morphospace_stack() implements Foote (1993)
. Other functions include
safe_taxonomic_reduction(), which implements Wilkinson (1995)
, map_dollo_changes() implements
the Dollo stochastic character mapping of Tarver et al. (2018)
, and estimate_ancestral_states() implements
the ancestral state options of Lloyd (2018) .
How to cite:
Graeme T. Lloyd (2015). Claddis: Measuring Morphological Diversity and Evolutionary Tempo. R package version 0.7.0, https://cran.r-project.org/web/packages/Claddis. Accessed 05 Jun. 2026.
Previous versions and publish date:
Other packages that cited Claddis R package
View Claddis citation profile
Other R packages that Claddis depends,
imports, suggests or enhances
Complete documentation for Claddis
Functions, R codes and Examples using
the Claddis R package
Some associated functions: Claddis-package . align_matrix_block . assign_taxa_to_bins . bin_changes . bin_character_completeness . bin_edge_lengths . build_cladistic_matrix . calculate_morphological_distances . compactify_matrix . date_nodes . day_2016 . estimate_ancestral_states . find_descendant_edges . find_linked_edges . find_minimum_spanning_edges . find_mrca . fix_root_time . gauthier_1986 . map_dollo_changes . map_stochastic_changes . match_tree_edges . michaux_1989 . ordinate_cladistic_matrix . partition_time_bins . plot_changes_on_tree . plot_chronophylomorphospace . plot_morphospace . plot_morphospace_stack . plot_multi_morphospace . plot_rates_character . plot_rates_time . plot_rates_tree . print.cladisticMatrix . prune_cladistic_matrix . read_nexus_matrix . safe_taxonomic_reduction . safe_taxonomic_reinsertion . test_rates . trim_marginal_whitespace . trim_matrix . write_nexus_matrix . write_tnt_matrix .
Some associated R codes: Claddis-package.R . align_matrix_block.R . assign_taxa_to_bins.R . bin_changes.R . bin_character_completeness.R . bin_edge_lengths.R . build_cladistic_matrix.R . calculate_morphological_distances.R . compactify_matrix.R . date_nodes.R . estimate_ancestral_states.R . find_descendant_edges.R . find_linked_edges.R . find_minimum_spanning_edges.R . find_mrca.R . fix_root_time.R . map_dollo_changes.R . map_stochastic_changes.R . match_tree_edges.R . ordinate_cladistic_matrix.R . partition_time_bins.R . plot_changes_on_tree.R . plot_chronophylomorphospace.R . plot_morphospace.R . plot_morphospace_stack.R . plot_multi_morphospace.R . plot_rates_character.R . plot_rates_time.R . plot_rates_tree.R . prune_cladistic_matrix.R . read_nexus_matrix.R . safe_taxonomic_reduction.R . safe_taxonomic_reinsertion.R . test_rates.R . trim_matrix.R . write_nexus_matrix.R . write_tnt_matrix.R . Full Claddis package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
envirem
Generation of bioclimatic rasters that are complementary to the typical 19 bioclim variables. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Pascal Title (view profile)
ibb
Call wrappers for Istanbul Metropolitan
Municipality's Open Data Portal (Turkish: Istanbul B ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Berk Orbay (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
msm
Functions for fitting continuous-time Markov and hidden
Markov multi-state models to longitudinal d ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Christopher Jackson (view profile)
crossurr
Doubly robust methods for evaluating surrogate markers as outlined in: Agniel D, Hejblum BP, Thiebau ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Denis Agniel (view profile)
27,268
R Packages
233,548
Dependencies
72,590
Author Associations
27,205
Publication Badges
