Other packages > Find by keyword >

CeRNASeek  

Identification and Analysis of ceRNA Regulation
View on CRAN: Click here


Download and install CeRNASeek package within the R console
Install from CRAN:
install.packages("CeRNASeek")

Install from Github:
library("remotes")
install_github("cran/CeRNASeek")

Install by package version:
library("remotes")
install_version("CeRNASeek", "2.1.3")



Attach the package and use:
library("CeRNASeek")
Maintained by
Mengying Zhang
[Scholar Profile | Author Map]
First Published: 2019-04-04
Latest Update: 2020-04-29
Description:
Provides several functions to identify and analyse miRNA sponge, including popular methods for identifying miRNA sponge interactions, two types of global ceRNA regulation prediction methods and four types of context-specific prediction methods( Li Y et al.(2017) ), which are based on miRNA-messenger RNA regulation alone, or by integrating heterogeneous data, respectively. In addition, For predictive ceRNA relationship pairs, this package provides several downstream analysis algorithms, including regulatory network analysis and functional annotation analysis, as well as survival prognosis analysis based on expression of ceRNA ternary pair.
How to cite:
Mengying Zhang (2019). CeRNASeek: Identification and Analysis of ceRNA Regulation. R package version 2.1.3, https://cran.r-project.org/web/packages/CeRNASeek. Accessed 08 Apr. 2025.
Previous versions and publish date:
1.0 (2019-04-04 17:50), 2.0 (2019-07-08 11:00), 2.1.2 (2020-01-11 07:30), 2.1 (2019-07-20 08:20)
Other packages that cited CeRNASeek R package
View CeRNASeek citation profile
Other R packages that CeRNASeek depends, imports, suggests or enhances
Complete documentation for CeRNASeek
Functions, R codes and Examples using the CeRNASeek R package
Some associated functions: CeRNASeek-package . ceRNA.Net . ceRNA.app . ceRNA.basic . ceRNA.cernia . ceRNA.cmi . ceRNA.cor . ceRNA.enrich . ceRNA.surv . dataset . surv.plot . 
Some associated R codes: ceRNA.Net.R . ceRNA.app.R . ceRNA.basic.R . ceRNA.cernia.R . ceRNA.cmi.R . ceRNA.cor.R . ceRNA.enrich.R . ceRNA.surv.R . surv.plot.R .  Full CeRNASeek package functions and examples
Downloads during the last 30 days
03/0903/1003/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/2903/3003/3104/0104/0204/0304/0404/0504/06Downloads for CeRNASeek024681012141618TrendBars

Today's Hot Picks in Authors and Packages

nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
seasonalclumped  
Toolbox for Clumped Isotope Seasonality Reconstructions
Compiles a set of functions and dummy data that simplify reconstructions of seasonal temperature va ...
Download / Learn more Package Citations See dependency  
dave  
Functions for "Data Analysis in Vegetation Ecology"
A collection of functions accompanying the book "Data Analysis in Vegetation Ecology". 3rd ed. CABI, ...
Download / Learn more Package Citations See dependency  
ssc  
Semi-Supervised Classification Methods
Provides a collection of self-labeled techniques for semi-supervised classification. In semi-superv ...
Download / Learn more Package Citations See dependency  
icr  
Compute Krippendorff's Alpha
Provides functions to compute and plot Krippendorff's inter-coder reliability coefficient alpha and ...
Download / Learn more Package Citations See dependency  
sybil  
Efficient Constrained Based Modelling
This Systems Biology Package Gelius-Dietrich et. al. 2012 doi10.11861752-0509-7-125 implements algor ...
Download / Learn more Package Citations See dependency  

24,012

R Packages

207,311

Dependencies

64,867

Author Associations

24,013

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA