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CeRNASeek
View on CRAN: Click
here
Download and install CeRNASeek package within the R console
Install from CRAN:
install.packages("CeRNASeek")
Install from Github:
library("remotes")
install_github("cran/CeRNASeek")
Install by package version:
library("remotes")
install_version("CeRNASeek", "2.1.3")
Attach the package and use:
library("CeRNASeek")
Maintained by
Mengying Zhang
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-04-04
Latest Update: 2020-04-29
Description:
Provides several functions to identify and analyse miRNA sponge, including
popular methods for identifying miRNA sponge interactions, two types
of global ceRNA regulation prediction methods and four types of context-specific
prediction methods( Li Y et al.(2017) ), which are based
on miRNA-messenger RNA regulation alone, or by integrating heterogeneous data,
respectively. In addition, For predictive ceRNA relationship pairs, this package
provides several downstream analysis algorithms, including regulatory network
analysis and functional annotation analysis, as well as survival prognosis analysis
based on expression of ceRNA ternary pair.
How to cite:
Mengying Zhang (2019). CeRNASeek: Identification and Analysis of ceRNA Regulation. R package version 2.1.3, https://cran.r-project.org/web/packages/CeRNASeek. Accessed 22 Dec. 2024.
Previous versions and publish date:
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Other R packages that CeRNASeek depends,
imports, suggests or enhances
Complete documentation for CeRNASeek
Functions, R codes and Examples using
the CeRNASeek R package
Some associated functions: CeRNASeek-package . ceRNA.Net . ceRNA.app . ceRNA.basic . ceRNA.cernia . ceRNA.cmi . ceRNA.cor . ceRNA.enrich . ceRNA.surv . dataset . surv.plot .
Some associated R codes: ceRNA.Net.R . ceRNA.app.R . ceRNA.basic.R . ceRNA.cernia.R . ceRNA.cmi.R . ceRNA.cor.R . ceRNA.enrich.R . ceRNA.surv.R . surv.plot.R . Full CeRNASeek package functions and examples
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