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CeRNASeek  

Identification and Analysis of ceRNA Regulation
View on CRAN: Click here


Download and install CeRNASeek package within the R console
Install from CRAN:
install.packages("CeRNASeek")

Install from Github:
library("remotes")
install_github("cran/CeRNASeek")

Install by package version:
library("remotes")
install_version("CeRNASeek", "2.1.3")



Attach the package and use:
library("CeRNASeek")
Maintained by
Mengying Zhang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-04-04
Latest Update: 2020-04-29
Description:
Provides several functions to identify and analyse miRNA sponge, including popular methods for identifying miRNA sponge interactions, two types of global ceRNA regulation prediction methods and four types of context-specific prediction methods( Li Y et al.(2017) ), which are based on miRNA-messenger RNA regulation alone, or by integrating heterogeneous data, respectively. In addition, For predictive ceRNA relationship pairs, this package provides several downstream analysis algorithms, including regulatory network analysis and functional annotation analysis, as well as survival prognosis analysis based on expression of ceRNA ternary pair.
How to cite:
Mengying Zhang (2019). CeRNASeek: Identification and Analysis of ceRNA Regulation. R package version 2.1.3, https://cran.r-project.org/web/packages/CeRNASeek. Accessed 15 Jul. 2026.
Previous versions and publish date:
1.0 (2019-04-04 17:50), 2.0 (2019-07-08 11:00), 2.1.2 (2020-01-11 07:30), 2.1 (2019-07-20 08:20), (2026-07-09 08:00)
Other packages that cited CeRNASeek R package
View CeRNASeek citation profile
Other R packages that CeRNASeek depends, imports, suggests or enhances
Complete documentation for CeRNASeek
Functions, R codes and Examples using the CeRNASeek R package
Some associated functions: CeRNASeek-package . ceRNA.Net . ceRNA.app . ceRNA.basic . ceRNA.cernia . ceRNA.cmi . ceRNA.cor . ceRNA.enrich . ceRNA.surv . dataset . surv.plot . 
Some associated R codes: ceRNA.Net.R . ceRNA.app.R . ceRNA.basic.R . ceRNA.cernia.R . ceRNA.cmi.R . ceRNA.cor.R . ceRNA.enrich.R . ceRNA.surv.R . surv.plot.R .  Full CeRNASeek package functions and examples
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