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Canek  

Batch Correction of Single Cell Transcriptome Data
View on CRAN: Click here


Download and install Canek package within the R console
Install from CRAN:
install.packages("Canek")

Install from Github:
library("remotes")
install_github("cran/Canek")

Install by package version:
library("remotes")
install_version("Canek", "0.2.5")



Attach the package and use:
library("Canek")
Maintained by
Martin Loza
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-03-23
Latest Update: 2023-12-08
Description:
Non-linear/linear hybrid method for batch-effect correction that uses Mutual Nearest Neighbors (MNNs) to identify similar cells between datasets. Reference: Loza M. et al. (NAR Genomics and Bioinformatics, 2020) .
How to cite:
Martin Loza (2022). Canek: Batch Correction of Single Cell Transcriptome Data. R package version 0.2.5, https://cran.r-project.org/web/packages/Canek. Accessed 25 Jun. 2026.
Previous versions and publish date:
0.2.0 (2022-03-23 13:10), 0.2.1 (2022-05-10 12:50), 0.2.2 (2023-05-31 06:50), 0.2.3 (2023-10-18 11:00), 0.2.4 (2023-11-06 01:10)
Other packages that cited Canek R package
View Canek citation profile
Other R packages that Canek depends, imports, suggests or enhances
Complete documentation for Canek
Functions, R codes and Examples using the Canek R package
Some associated functions: Canek-package . CheckZeroCV . CorrectBatch . CorrectBatches . EkfBE . Fuzzy . MeanBE . MedianBE . PairsFiltering . RunCanek . SimBatches . 
Some associated R codes: BatchCorrection.R . Canek-package.R . Cluster.R . Conversions.R . Data.R . Estimation.R . FilterPairs.R . Fuzzy.R . Graph.R . MNN.R . RunCanek.R .  Full Canek package functions and examples
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