Other packages > Find by keyword >

CSESA  

CRISPR-Based Salmonella Enterica Serotype Analyzer
View on CRAN: Click here


Download and install CSESA package within the R console
Install from CRAN:
install.packages("CSESA")

Install from Github:
library("remotes")
install_github("cran/CSESA")

Install by package version:
library("remotes")
install_version("CSESA", "1.2.0")



Attach the package and use:
library("CSESA")
Maintained by
Xia Zhang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-06-15
Latest Update: 2019-03-03
Description:
Salmonella enterica is a major cause of bacterial food-borne disease worldwide. Serotype identification is the most commonly used typing method to characterize Salmonella isolates. However, experimental serotyping needs great cost on manpower and resources. Recently, we found that the newly incorporated spacer in the clustered regularly interspaced short palindromic repeat (CRISPR) could serve as an effective marker for typing of Salmonella. It was further revealed by Li et. al (2014) that recognized types based on the combination of two newly incorporated spacer in both CRISPR loci showed high accordance with serotypes. Here, we developed an R package 'CSESA' to predict the serotype based on this finding. Considering it
How to cite:
Xia Zhang (2018). CSESA: CRISPR-Based Salmonella Enterica Serotype Analyzer. R package version 1.2.0, https://cran.r-project.org/web/packages/CSESA. Accessed 07 Jun. 2026.
Previous versions and publish date:
1.0.4 (2018-06-15 17:26), 1.1.0 (2018-09-24 17:10), 1.1.1 (2018-09-29 09:00)
Other packages that cited CSESA R package
View CSESA citation profile
Other R packages that CSESA depends, imports, suggests or enhances
Complete documentation for CSESA
Functions, R codes and Examples using the CSESA R package
Some associated functions: CSESA . FindSerotype . GetAllNewSpacers . GetNewSpacer . GetNewSpacerCode . GetReverseComplement . GetStr . PCR . ReadInFile . WGS . 
Some associated R codes: CSESA.R .  Full CSESA package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

cesR  
Access the Canadian Election Study Datasets
Makes accessing and loading the Canadian Election Study (, ...
Download / Learn more Package Citations See dependency  
keep  
Arrays with Better Control over Dimension Dropping
Provides arrays with flexible control over dimension dropping when subscripting. ...
Download / Learn more Package Citations See dependency  
embryogrowth  
Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Tools to analyze the embryo growth and the sexualisation thermal reaction norms. See ...
Download / Learn more Package Citations See dependency  
curtailment  
Finds Binary Outcome Designs Using Stochastic Curtailment
Finds single- and two-arm designs using stochastic curtailment, as described by Law et al. (2022) ...
Download / Learn more Package Citations See dependency  
gRain  
Bayesian Networks
Probability propagation in graphical independence networks, also known as Bayesian networks or prob ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

27,372

R Packages

233,548

Dependencies

72,820

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA