R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
CREAM
View on CRAN: Click
here
Download and install CREAM package within the R console
Install from CRAN:
install.packages("CREAM")
Install from Github:
library("remotes")
install_github("cran/CREAM") Install by package version:
library("remotes")
install_version("CREAM", "1.1.1") Attach the package and use:
library("CREAM")
Maintained by
Benjamin Haibe-Kains
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-10-27
Latest Update: 2018-06-06
Description:
Provides a new method for identification of clusters of genomic
regions within chromosomes. Primarily, it is used for calling clusters of
cis-regulatory elements (COREs). 'CREAM' uses genome-wide maps of genomic regions
in the tissue or cell type of interest, such as those generated from chromatin-based
assays including DNaseI, ATAC or ChIP-Seq. 'CREAM' considers proximity of the elements
within chromosomes of a given sample to identify COREs in the following steps:
1) It identifies window size or the maximum allowed distance between the elements
within each CORE, 2) It identifies number of elements which should be clustered
as a CORE, 3) It calls COREs, 4) It filters the COREs with lowest order which
does not pass the threshold considered in the approach.
How to cite:
Benjamin Haibe-Kains (2017). CREAM: Clustering of Genomic Regions Analysis Method. R package version 1.1.1, https://cran.r-project.org/web/packages/CREAM. Accessed 04 Jun. 2026.
Other packages that cited CREAM R package
View CREAM citation profile
Other R packages that CREAM depends,
imports, suggests or enhances
Complete documentation for CREAM
Functions, R codes and Examples using
the CREAM R package
Some associated functions: CREAM . ElementRecog . PeakMinFilt . WindowSizeRecog . WindowVec .
Some associated R codes: CREAM.R . ElementRecog.R . PeakMinFilt.R . WindowSizeRecog.R . WindowVec.R . Full CREAM package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
shinybusy
Add indicators (spinner, progress bar, gif) in your 'shiny'
applications to show the user that the ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Victor Perrier (view profile)
AMPLE
Three Shiny apps are provided that introduce Harvest Control Rules (HCR) for fisheries management.
...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Finlay Scott (view profile)
phers
Use phenotype risk scores based on linked clinical and genetic data
to study Mendelian disease and ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Jake Hughey (view profile)
murphydiagram
Data and code for the paper by Ehm, Gneiting, Jordan and
Krueger ('Of Quantiles and Expectiles: Con ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Fabian Krueger (view profile)
golem
An opinionated framework for building a production-ready
'Shiny' application. This package contains ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Colin Fay (view profile)
crplyr
In order to facilitate analysis of datasets hosted on the Crunch
data platform ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Greg Freedman Ellis (view profile)
27,268
R Packages
233,548
Dependencies
72,590
Author Associations
27,205
Publication Badges
