R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
CREAM
View on CRAN: Click
here
Download and install CREAM package within the R console
Install from CRAN:
install.packages("CREAM")
Install from Github:
library("remotes")
install_github("cran/CREAM")
Install by package version:
library("remotes")
install_version("CREAM", "1.1.1")
Attach the package and use:
library("CREAM")
Maintained by
Benjamin Haibe-Kains
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.CREAM . https://github.com/bhklab/CREAM/issues . https://github.com/bhklab/CREAM . CREAM results . CREAM.pdf . CREAM_1.1.1.tar.gz . CREAM_1.1.1.zip . CREAM_1.1.1.zip . CREAM_1.1.1.zip . CREAM_1.1.1.tgz . CREAM_1.1.1.tgz . CREAM_1.1.1.tgz . CREAM_1.1.1.tgz . CREAM archive . https://CRAN.R-project.org/package=CREAM .
First Published: 2017-10-27
Latest Update: 2018-06-06
Description:
Provides a new method for identification of clusters of genomic
regions within chromosomes. Primarily, it is used for calling clusters of
cis-regulatory elements (COREs). 'CREAM' uses genome-wide maps of genomic regions
in the tissue or cell type of interest, such as those generated from chromatin-based
assays including DNaseI, ATAC or ChIP-Seq. 'CREAM' considers proximity of the elements
within chromosomes of a given sample to identify COREs in the following steps:
1) It identifies window size or the maximum allowed distance between the elements
within each CORE, 2) It identifies number of elements which should be clustered
as a CORE, 3) It calls COREs, 4) It filters the COREs with lowest order which
does not pass the threshold considered in the approach.
How to cite:
Benjamin Haibe-Kains (2017). CREAM: Clustering of Genomic Regions Analysis Method. R package version 1.1.1, https://cran.r-project.org/web/packages/CREAM. Accessed 02 May. 2025.
Other packages that cited CREAM R package
View CREAM citation profile
Other R packages that CREAM depends,
imports, suggests or enhances
Complete documentation for CREAM
Functions, R codes and Examples using
the CREAM R package
Some associated functions: CREAM . ElementRecog . PeakMinFilt . WindowSizeRecog . WindowVec .
Some associated R codes: CREAM.R . ElementRecog.R . PeakMinFilt.R . WindowSizeRecog.R . WindowVec.R . Full CREAM package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
nlsem
Estimation of structural equation models with nonlinear effects
and underlying nonnormal distributi ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Nora Umbach (view profile)
quotedargs
A facility for writing functions that quote their arguments,
may sometimes evaluate them in the env ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Radford Neal (view profile)
contFracR
Converts numbers to continued fractions and back again. A solver for Pell's Equation is provided. T ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Carl Witthoft (view profile)
frailtypack
The following several classes of frailty models using a penalized likelihood estimation on the hazar ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Virginie Rondeau (view profile)
disprofas
Similarity of dissolution profiles is assessed using the
similarity factor f2 according to the EMA ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Pius Dahinden (view profile)
24,142
R Packages
207,311
Dependencies
65,176
Author Associations
24,143
Publication Badges
