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CNVScope  

A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization
View on CRAN: Click here


Download and install CNVScope package within the R console
Install from CRAN:
install.packages("CNVScope")

Install from Github:
library("remotes")
install_github("cran/CNVScope")

Install by package version:
library("remotes")
install_version("CNVScope", "3.7.2")



Attach the package and use:
library("CNVScope")
Maintained by
James Dalgleish
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-10-20
Latest Update: 2022-03-30
Description:
Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.
How to cite:
James Dalgleish (2018). CNVScope: A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization. R package version 3.7.2, https://cran.r-project.org/web/packages/CNVScope. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.9.7 (2018-10-20 09:10), 2.7.0 (2019-07-24 01:22), 2.7.2.5 (2019-09-22 19:00), 2.7.7 (2019-10-14 06:30), 2.8.1 (2019-10-24 06:40), 2.8.2 (2019-10-25 10:00), 2.9.2 (2019-12-05 17:50), 2.9.4 (2019-12-07 16:30), 3.0.5 (2020-04-22 12:02), 3.0.6 (2020-04-27 17:30), 3.0.8 (2020-04-28 14:10), 3.0.9 (2020-04-29 10:20), 3.1.8 (2020-07-03 06:30), 3.3.7 (2020-11-29 01:50), 3.3.9 (2020-12-15 09:20), 3.5.6 (2021-01-11 00:20), 3.6.0 (2021-05-24 13:10)
Other packages that cited CNVScope R package
View CNVScope citation profile
Other R packages that CNVScope depends, imports, suggests or enhances
Complete documentation for CNVScope
Functions, R codes and Examples using the CNVScope R package
Some associated functions: CNVScopeserver . GRanges_to_underscored_pos . averageMatrixEdges . calcCNVKernelProbDist . calcVecLMs . createChromosomalMatrixSet . divisors . downsample_genomic_matrix . extractNegLogPval . formSampleMatrixFromRawGDCData . freadGDCfile . getAnnotationMatrix . getAsymmetricBlockIndices . getBlockAverageMatrixFromBreakpoints . getGlobalRescalingStats . getInterchromosomalInteractivePlot . importBreakpointBed . mathead . nbl_result_matrix_sign_small . postProcessLinRegMatrix . rebinGenomicInteractions . runCNVScopeLocal . runCNVScopeShiny . signedRescale . underscored_pos_to_GRanges . writeAsymmetricMeltedChromosomalMatrixToDisk . writeMeltedChromosomalMatrixToDisk . 
Some associated R codes: CNVScopeserver.R . GRanges_to_underscored_pos.R . averageMatrixEdges.R . calcCNVKernelProbDist.R . calcVecLMs.R . createChromosomalMatrixSet.R . divisors.R . downsample_genomic_matrix.R . extractNegLogPval.R . formSampleMatrixFromRawGDCData.R . freadGDCfile.R . getAnnotationMatrix.R . getAsymmetricBlockIndices.R . getBlockAverageMatrixFromBreakpoints.R . getGlobalRescalingStats.R . getInterchromosomalInteractivePlot.R . importBreakpointBed.R . mathead.R . nbl_result_matrix_sign_small.R . postProcessLinRegMatrix.R . rebinGenomicInteractions.R . runCNVScopeLocal.R . runCNVScopeShiny.R . signedRescale.R . underscored_pos_to_GRanges.R . writeAsymmetricMeltedMatrixToDisk.R . writeMeltedChromosomalMatrixToDisk.R .  Full CNVScope package functions and examples
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