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CMplot  

Circle Manhattan Plot
View on CRAN: Click here


Download and install CMplot package within the R console
Install from CRAN:
install.packages("CMplot")

Install from Github:
library("remotes")
install_github("cran/CMplot")

Install by package version:
library("remotes")
install_version("CMplot", "4.5.1")



Attach the package and use:
library("CMplot")
Maintained by
LiLin-Yin
[Scholar Profile | Author Map]
First Published: 2015-05-26
Latest Update: 2024-01-19
Description:
Manhattan plot, a type of scatter plot, was widely used to display the association results. However, it is usually time-consuming and laborious for a non-specialist user to write scripts and adjust parameters of an elaborate plot. Moreover, the ever-growing traits measured have necessitated the integration of results from different Genome-wide association study researches. Circle Manhattan Plot is the first open R package that can lay out. Genome-wide association study P-value results in both traditional rectangular patterns, QQ-plot and novel circular ones. United in only one bull's eye style plot, association results from multiple traits can be compared interactively, thereby to reveal both similarities and differences between signals. Additional functions include: highlight signals, a group of SNPs, chromosome visualization and candidate genes around SNPs.
How to cite:
LiLin-Yin (2015). CMplot: Circle Manhattan Plot. R package version 4.5.1, https://cran.r-project.org/web/packages/CMplot. Accessed 10 Apr. 2025.
Previous versions and publish date:
1.0.1 (2015-05-26 09:38), 2.0.1 (2015-06-16 11:49), 3.0.1 (2015-08-28 16:36), 3.0.3 (2015-10-18 10:24), 3.1.3 (2016-06-02 13:39), 3.1.4 (2016-07-13 10:48), 3.2.0 (2017-03-20 06:22), 3.2.1 (2017-07-06 07:03), 3.3.0 (2017-12-14 14:04), 3.3.1 (2018-01-03 11:11), 3.3.3 (2018-12-06 07:40), 3.4.0 (2019-09-05 07:50), 3.5.1 (2019-12-10 12:30), 3.6.0 (2020-04-04 13:40), 3.6.2 (2020-06-30 07:50), 3.7.0 (2021-10-20 09:50), 4.0.0 (2022-01-13 10:42), 4.1.0 (2022-05-24 04:20), 4.2.0 (2022-10-12 12:32), 4.3.1 (2023-04-21 11:02), 4.4.1 (2023-08-18 06:02), 4.4.3 (2023-10-20 09:50), 4.5.0 (2023-11-27 10:20)
Other packages that cited CMplot R package
View CMplot citation profile
Other R packages that CMplot depends, imports, suggests or enhances
Complete documentation for CMplot
Functions, R codes and Examples using the CMplot R package
Some associated functions: CMplot-package . cattle50K . pig60K . 
Some associated R codes: zzz.R .  Full CMplot package functions and examples
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