Other packages > Find by keyword >

CLONETv2  

Clonality Estimates in Tumor
View on CRAN: Click here


Download and install CLONETv2 package within the R console
Install from CRAN:
install.packages("CLONETv2")

Install from Github:
library("remotes")
install_github("cran/CLONETv2")

Install by package version:
library("remotes")
install_version("CLONETv2", "2.2.1")



Attach the package and use:
library("CLONETv2")
Maintained by
Yari Ciani
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-04-05
Latest Update: 2021-10-13
Description:
Analyze data from next-generation sequencing experiments on genomic samples. 'CLONETv2' offers a set of functions to compute allele specific copy number and clonality from segmented data and SNPs position pileup. The package has also calculated the clonality of single nucleotide variants given read counts at mutated positions. The package has been developed at the laboratory of Computational and Functional Oncology, Department of CIBIO, University of Trento (Italy), under the supervision of prof Francesca Demichelis. References: Prandi et al. (2014) ; Carreira et al. (2014) ; Romanel et al. (2015) .
How to cite:
Yari Ciani (2019). CLONETv2: Clonality Estimates in Tumor. R package version 2.2.1, https://cran.r-project.org/web/packages/CLONETv2. Accessed 07 Mar. 2026.
Previous versions and publish date:
2.0 (2019-04-05 15:12), 2.1.0 (2019-05-20 18:15)
Other packages that cited CLONETv2 R package
View CLONETv2 citation profile
Other R packages that CLONETv2 depends, imports, suggests or enhances
Complete documentation for CLONETv2
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

SAMtool  
Stock Assessment Methods Toolkit
Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
portalr  
Create Useful Summaries of the Portal Data
Download and generate summaries for the rodent, plant, ant, and weather data from the Portal Projec ...
Download / Learn more Package Citations See dependency  
testDriveR  
Teaching Data for Statistics and Data Science
Provides data sets for teaching statistics and data science courses. It includes a sample of data f ...
Download / Learn more Package Citations See dependency  
lmSubsets  
Exact Variable-Subset Selection in Linear Regression
Exact and approximation algorithms for variable-subset selection in ordinary linear regression mode ...
Download / Learn more Package Citations See dependency  
ReviewR  
A Light-Weight, Portable Tool for Reviewing Individual Patient Records
A portable Shiny tool to explore patient-level electronic health record data and perform chart revi ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,376

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA