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CKMRpop  

Forward-in-Time Simulation and Tallying of Pairwise Relationships
View on CRAN: Click here


Download and install CKMRpop package within the R console
Install from CRAN:
install.packages("CKMRpop")

Install from Github:
library("remotes")
install_github("cran/CKMRpop")

Install by package version:
library("remotes")
install_version("CKMRpop", "0.1.3")



Attach the package and use:
library("CKMRpop")
Maintained by
Eric C. Anderson
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-06-24
Latest Update: 2021-07-17
Description:
Provides an R wrapper around the program 'spip' (), a C program for the simulation of pedigrees within age-structured populations with user-specified life histories. Also includes a variety of functions to parse 'spip' output to compile information about related pairs amongst simulated, sampled individuals, to assess the feasibility and potential accuracy of close-kin mark-recapture (CKMR). Full documentation and vignettes are mirrored at and can be read online there.
How to cite:
Eric C. Anderson (2021). CKMRpop: Forward-in-Time Simulation and Tallying of Pairwise Relationships. R package version 0.1.3, https://cran.r-project.org/web/packages/CKMRpop. Accessed 03 Dec. 2024.
Previous versions and publish date:
0.1.2 (2021-06-24 13:20)
Other packages that cited CKMRpop R package
View CKMRpop citation profile
Other R packages that CKMRpop depends, imports, suggests or enhances
Complete documentation for CKMRpop
Functions, R codes and Examples using the CKMRpop R package
Some associated functions: amm2tibble . anc_match_masks . ancestor_abbrvs . ancestor_vectors_cpp . basic_amm_plot . cat_dom_relat . compile_related_pairs . count_and_plot_ancestry_matrices . count_and_plot_mate_distribution . downsample_pairs . example_amms . find_ancestors_and_relatives_of_samples . gg_add_generation_bands . gg_add_zone_perimeters . ggplot_census_by_year_age_sex . half_first_cousin_amm . install_spip . int_pow2 . leslie_from_spip . pipe . plot_amm_from_matrix . plot_conn_comps . prepare_for_dfs . primary_ancestor_pairs . rcpp_ancestors_and_relatives . recapture_pairs . relationship_zone_names . relationship_zone_perimeters . relpair_conn_comps . run_spip . search_down . search_up . slurp_spip . species_1_life_history . species_1_slurped_results . species_1_slurped_results_100_loci . species_1_slurped_results_1gen . species_2_life_history . spip_binary . spip_binary_path . spip_exists . spip_help . spip_help_full . summarize_offspring_and_mate_numbers . summarize_survival_from_census . three_pops_no_mig_slurped_results . three_pops_with_mig_slurped_results . uncooked_spaghetti . 
Some associated R codes: RcppExports.R . amm2tibble.R . anc_match_masks.R . ancestor_abbrvs.R . cat_dom_relat.R . compile_related_pairs.R . count_and_plot_ancestry_matrices.R . count_and_plot_mate_distribution.R . data.R . downsample_pairs.R . find_ancestors_and_relatives_of_samples.R . gg_add_generation_bands.R . gg_add_zone_perimeters.R . ggplot_census_by_year_age_sex.R . import.R . install_spip.R . leslie_from_spip.R . plot_amm_from_matrix.R . plot_conn_comps.R . prepare_for_dfs.R . recapture_pairs.R . relationship_zone_perimeters.R . relpair_conn_comps.R . run_spip.R . slurp_spip.R . spip_binary.R . spip_binary_path.R . spip_exists.R . spip_help.R . spip_help_full.R . summarize_offspring_and_mate_numbers.R . summarize_survival_from_census.R . uncooked_spaghetti.R .  Full CKMRpop package functions and examples
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