Other packages > Find by keyword >

CITMIC  

Estimation of Cell Infiltration Based on Cell Crosstalk
View on CRAN: Click here


Download and install CITMIC package within the R console
Install from CRAN:
install.packages("CITMIC")

Install from Github:
library("remotes")
install_github("cran/CITMIC")

Install by package version:
library("remotes")
install_version("CITMIC", "0.1.2")



Attach the package and use:
library("CITMIC")
Maintained by
Junwei Han
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-06-14
Latest Update: 2024-06-14
Description:
A systematic biology tool was developed to identify cell infiltration via Individualized Cell-Cell interaction network. 'CITMIC' first constructed a weighted cell interaction network through integrating Cell-target interaction information, molecular function data from Gene Ontology (GO) database and gene transcriptomic data in specific sample, and then, it used a network propagation algorithm on the network to identify cell infiltration for the sample. Ultimately, cell infiltration in the patient dataset was obtained by normalizing the centrality scores of the cells.
How to cite:
Junwei Han (2024). CITMIC: Estimation of Cell Infiltration Based on Cell Crosstalk. R package version 0.1.2, https://cran.r-project.org/web/packages/CITMIC. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.1.0 (2024-06-14 17:10), 0.1.1 (2024-09-17 09:50)
Other packages that cited CITMIC R package
View CITMIC citation profile
Other R packages that CITMIC depends, imports, suggests or enhances
Complete documentation for CITMIC
Functions, R codes and Examples using the CITMIC R package
Full CITMIC package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
LOGANTree  
Tree-Based Models for the Analysis of Log Files from Computer-Based Assessments
Enables researchers to model log-file data from computer-based assessments using machine-learning te ...
Download / Learn more Package Citations See dependency  
Maintainer: Qi Qin (view profile)
composits  
Compositional, Multivariate and Univariate Time Series Outlier Ensemble
A compositional multivariate and univariate time series outlier ensemble.It uses the four R packages ...
Download / Learn more Package Citations See dependency  
tropAlgebra  
Tropical Algebraic Functions
It includes functions like tropical addition, tropical multiplication for vectors and matrices. In t ...
Download / Learn more Package Citations See dependency  
dmlalg  
Double Machine Learning Algorithms
Implementation of double machine learning (DML) algorithms in R, based on Emmenegger and Buehlmann ...
Download / Learn more Package Citations See dependency  
wordspace  
Distributional Semantic Models in R
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA