Other packages > Find by keyword >

CITMIC  

Estimation of Cell Infiltration Based on Cell Crosstalk
View on CRAN: Click here


Download and install CITMIC package within the R console
Install from CRAN:
install.packages("CITMIC")

Install from Github:
library("remotes")
install_github("cran/CITMIC")

Install by package version:
library("remotes")
install_version("CITMIC", "0.1.3")



Attach the package and use:
library("CITMIC")
Maintained by
Junwei Han
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-06-14
Latest Update: 2024-11-08
Description:
A systematic biology tool was developed to identify cell infiltration via Individualized Cell-Cell interaction network. 'CITMIC' first constructed a weighted cell interaction network through integrating Cell-target interaction information, molecular function data from Gene Ontology (GO) database and gene transcriptomic data in specific sample, and then, it used a network propagation algorithm on the network to identify cell infiltration for the sample. Ultimately, cell infiltration in the patient dataset was obtained by normalizing the centrality scores of the cells.
How to cite:
Junwei Han (2024). CITMIC: Estimation of Cell Infiltration Based on Cell Crosstalk. R package version 0.1.3, https://cran.r-project.org/web/packages/CITMIC. Accessed 06 Aug. 2026.
Previous versions and publish date:
0.1.0 (2024-06-14 17:10), 0.1.1 (2024-09-17 09:50), 0.1.2 (2024-11-08 13:20), (2026-07-09 07:59)
Other packages that cited CITMIC R package
View CITMIC citation profile
Other R packages that CITMIC depends, imports, suggests or enhances
Complete documentation for CITMIC
Functions, R codes and Examples using the CITMIC R package
Full CITMIC package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

RRedshiftSQL  
R Interface to the 'Redshift' Database
Superclasses 'PostgreSQL' connection to help enable full 'dplyr' functionality on 'Redshift'. ...
Download / Learn more Package Citations See dependency  
TMDb  
Access to TMDb API
Provides an R-interface to the TMDb API (see TMDb API on < ...
Download / Learn more Package Citations See dependency  
SAMBA  
Selection and Misclassification Bias Adjustment for Logistic Regression Models
Health research using data from electronic health records (EHR) has gained popularity, but miscla ...
Download / Learn more Package Citations See dependency  
lsmeans  
Least-Squares Means
Obtain least-squares means for linear, generalized linear, and mixed models. Compute contrasts or l ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA