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CITMIC  

Estimation of Cell Infiltration Based on Cell Crosstalk
View on CRAN: Click here


Download and install CITMIC package within the R console
Install from CRAN:
install.packages("CITMIC")

Install from Github:
library("remotes")
install_github("cran/CITMIC")

Install by package version:
library("remotes")
install_version("CITMIC", "0.1.2")



Attach the package and use:
library("CITMIC")
Maintained by
Junwei Han
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-06-14
Latest Update: 2024-06-14
Description:
A systematic biology tool was developed to identify cell infiltration via Individualized Cell-Cell interaction network. 'CITMIC' first constructed a weighted cell interaction network through integrating Cell-target interaction information, molecular function data from Gene Ontology (GO) database and gene transcriptomic data in specific sample, and then, it used a network propagation algorithm on the network to identify cell infiltration for the sample. Ultimately, cell infiltration in the patient dataset was obtained by normalizing the centrality scores of the cells.
How to cite:
Junwei Han (2024). CITMIC: Estimation of Cell Infiltration Based on Cell Crosstalk. R package version 0.1.2, https://cran.r-project.org/web/packages/CITMIC. Accessed 21 Nov. 2024.
Previous versions and publish date:
0.1.0 (2024-06-14 17:10), 0.1.1 (2024-09-17 09:50)
Other packages that cited CITMIC R package
View CITMIC citation profile
Other R packages that CITMIC depends, imports, suggests or enhances
Complete documentation for CITMIC
Functions, R codes and Examples using the CITMIC R package
Full CITMIC package functions and examples
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