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CINmetrics
View on CRAN: Click
here
Download and install CINmetrics package within the R console
Install from CRAN:
install.packages("CINmetrics")
Install from Github:
library("remotes")
install_github("cran/CINmetrics")
Install by package version:
library("remotes")
install_version("CINmetrics", "0.1.0")
Attach the package and use:
library("CINmetrics")
Maintained by
Vishal H. Oza
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-08-02
Latest Update: 2021-08-02
Description:
Implement various chromosomal instability metrics. 'CINmetrics' (Chromosomal INstability metrics) provides functions to
calculate various chromosomal instability metrics on masked Copy Number Variation(CNV) data at individual sample level. The
chromosomal instability metrics have been implemented as described in the following studies:
Baumbusch LO et al. 2013 ,
Davidson JM et al. 2014 ,
Chin SF et al. 2007 .
How to cite:
Vishal H. Oza (2021). CINmetrics: Calculate Chromosomal Instability Metrics. R package version 0.1.0, https://cran.r-project.org/web/packages/CINmetrics. Accessed 22 Dec. 2024.
Previous versions and publish date:
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Other R packages that CINmetrics depends,
imports, suggests or enhances
Complete documentation for CINmetrics
Functions, R codes and Examples using
the CINmetrics R package
Some associated functions: CINmetrics . cna . countingBaseSegments . countingBreakPoints . fga . maskCNV_BRCA . tai . taiModified .
Some associated R codes: cin_metrics.R . data.R . Full CINmetrics package functions and examples
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