Other packages > Find by keyword >

CFAcoop  

Colony Formation Assay: Taking into Account Cellular Cooperation
View on CRAN: Click here


Download and install CFAcoop package within the R console
Install from CRAN:
install.packages("CFAcoop")

Install from Github:
library("remotes")
install_github("cran/CFAcoop")

Install by package version:
library("remotes")
install_version("CFAcoop", "1.0.0")



Attach the package and use:
library("CFAcoop")
Maintained by
Daniel Samaga
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-11-25
Latest Update: 2021-06-11
Description:
Cellular cooperation compromises the plating efficiency-based analysis of clonogenic survival data. This tool provides functions that enable a robust analysis of colony formation assay (CFA) data in presence or absence of cellular cooperation. The implemented method has been described in Brix et al. (2020). (Brix, N., Samaga, D., Hennel, R. et al. "The clonogenic assay: robustness of plating efficiency-based analysis is strongly compromised by cellular cooperation." Radiat Oncol 15, 248 (2020). ) Power regression for parameter estimation, calculation of survival fractions, uncertainty analysis and plotting functions are provided.
How to cite:
Daniel Samaga (2020). CFAcoop: Colony Formation Assay: Taking into Account Cellular Cooperation. R package version 1.0.0, https://cran.r-project.org/web/packages/CFAcoop. Accessed 25 Jun. 2026.
Previous versions and publish date:
0.1.0 (2020-11-25 10:30)
Other packages that cited CFAcoop R package
View CFAcoop citation profile
Other R packages that CFAcoop depends, imports, suggests or enhances
Complete documentation for CFAcoop
Functions, R codes and Examples using the CFAcoop R package
Some associated functions: CFAdata . analyze_survival . calculate_sf . export_sf . plot_sf . pwr_reg . 
Some associated R codes: CFAdata.R . analyze_survival.R . calculate_sf.R . export_sf.R . plot_sf.R . pwr_reg.R .  Full CFAcoop package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  
airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  
sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA