Other packages > Find by keyword >

CFAcoop  

Colony Formation Assay: Taking into Account Cellular Cooperation
View on CRAN: Click here


Download and install CFAcoop package within the R console
Install from CRAN:
install.packages("CFAcoop")

Install from Github:
library("remotes")
install_github("cran/CFAcoop")

Install by package version:
library("remotes")
install_version("CFAcoop", "1.0.0")



Attach the package and use:
library("CFAcoop")
Maintained by
Daniel Samaga
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-11-25
Latest Update: 2021-06-11
Description:
Cellular cooperation compromises the plating efficiency-based analysis of clonogenic survival data. This tool provides functions that enable a robust analysis of colony formation assay (CFA) data in presence or absence of cellular cooperation. The implemented method has been described in Brix et al. (2020). (Brix, N., Samaga, D., Hennel, R. et al. "The clonogenic assay: robustness of plating efficiency-based analysis is strongly compromised by cellular cooperation." Radiat Oncol 15, 248 (2020). ) Power regression for parameter estimation, calculation of survival fractions, uncertainty analysis and plotting functions are provided.
How to cite:
Daniel Samaga (2020). CFAcoop: Colony Formation Assay: Taking into Account Cellular Cooperation. R package version 1.0.0, https://cran.r-project.org/web/packages/CFAcoop. Accessed 08 Oct. 2026.
Previous versions and publish date:
0.1.0 (2020-11-25 10:30), (2026-07-09 07:59)
Other packages that cited CFAcoop R package
View CFAcoop citation profile
Other R packages that CFAcoop depends, imports, suggests or enhances
Complete documentation for CFAcoop
Functions, R codes and Examples using the CFAcoop R package
Some associated functions: CFAdata . analyze_survival . calculate_sf . export_sf . plot_sf . pwr_reg . 
Some associated R codes: CFAdata.R . analyze_survival.R . calculate_sf.R . export_sf.R . plot_sf.R . pwr_reg.R .  Full CFAcoop package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

climwin  
Climate Window Analysis
Contains functions to detect and visualise periods of climate sensitivity (climate windows) for a g ...
Download / Learn more Package Citations See dependency  
metafor  
Meta-Analysis Package for R
A comprehensive collection of functions for conducting meta-analyses in R. The package includes func ...
Download / Learn more Package Citations See dependency  
colorfindr  
Extract Colors from Windows BMP, JPEG, PNG, TIFF, and SVG Format Images
Extracts colors from various image types, returns customized reports and plots treemaps and 3D scat ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
dineR  
Differential Network Estimation in R
An efficient and convenient set of functions to perform differential network estimation through the ...
Download / Learn more Package Citations See dependency  
abc.data  
Data Only: Tools for Approximate Bayesian Computation (ABC)
Contains data which are used by functions of the 'abc' package. ...
Download / Learn more Package Citations See dependency  

28,905

R Packages

247,686

Dependencies

76,495

Author Associations

28,906

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA