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CEDARS  

Simple and Efficient Pipeline for Electronic Health Record Annotation
View on CRAN: Click here


Download and install CEDARS package within the R console
Install from CRAN:
install.packages("CEDARS")

Install from Github:
library("remotes")
install_github("cran/CEDARS")

Install by package version:
library("remotes")
install_version("CEDARS", "1.90")



Attach the package and use:
library("CEDARS")
Maintained by
Simon Mantha
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-02-07
Latest Update: 2023-08-31
Description:
Streamlined annotation pipeline for collection and aggregation of time-to-event data in retrospective clinical studies. CEDARS aims to systematize and accelerate the review of electronic health record EHR corpora. It accomplishes those goals by deploying natural language processing as a tool to assist detection and characterization of clinical events by human abstractors. The online user manual presents the necessary steps to install CEDARS process EHR corpora and obtain clinical event dates httpscedars.io.
How to cite:
Simon Mantha (2021). CEDARS: Simple and Efficient Pipeline for Electronic Health Record Annotation. R package version 1.90, https://cran.r-project.org/web/packages/CEDARS
Previous versions and publish date:
1.90 (2021-02-07 11:40)
Other packages that cited CEDARS R package
View CEDARS citation profile
Other R packages that CEDARS depends, imports, suggests or enhances
Functions, R codes and Examples using the CEDARS R package
Some associated functions: add_end_user . aggregate_note . automatic_NLP_processor . batch_processor_db . colorize . commit_patient . complete_case . create_project . db_download . db_upload . delete_end_user . document_processor . dot-onLoad . download_events . end_users . fast_merge_umls . find_model . find_project_name . format_keywords . get_data . get_model . get_patient . get_wrapper . id_expander . initialize_annotations . initialize_notes . initialize_patients . initialize_users . lemma_match . lock_records . lock_records_admin . mark . mongo_connect . mongo_uri_standard . mrconso_upload . mrrel_upload . negation_tagger . negex . negex_processor . negex_token_tagger . negex_upload . parse_query . password_verification . paste_sections . patient_processor_par . patient_roster_update . populate_annotations . populate_dictionaries . populate_notes . populate_query . populate_users . post_data . post_wrapper . pre_search . sanitize . sanitize_query . save_credentials . save_query . save_tags . select_patient . sentence_eval . sentence_search . simulated_patients . standardize_nlp . start_local . terminate_project . terminate_project_new . token_splitter . umls_processor . unlock_records . unlock_records_admin . unlock_user . upload_events . upload_notes . 
Some associated R codes: UMLS_processor.R . accessory_functions.R . data_io.R . database.R . dictionaries.R . negex.R . negex_data.R . search.R . simulated_patients_data.R . text_processing.R . zzz.R .  Full CEDARS package functions and examples
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