Other packages > Find by keyword >

CEDARS  

Simple and Efficient Pipeline for Electronic Health Record Annotation
View on CRAN: Click here


Download and install CEDARS package within the R console
Install from CRAN:
install.packages("CEDARS")

Install from Github:
library("remotes")
install_github("cran/CEDARS")

Install by package version:
library("remotes")
install_version("CEDARS", "1.90")



Attach the package and use:
library("CEDARS")
Maintained by
Simon Mantha
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-02-07
Latest Update:
Description:
Streamlined annotation pipeline for collection and aggregation of time-to-event data in retrospective clinical studies. CEDARS aims to systematize and accelerate the review of electronic health record EHR corpora. It accomplishes those goals by deploying natural language processing as a tool to assist detection and characterization of clinical events by human abstractors. The online user manual presents the necessary steps to install CEDARS process EHR corpora and obtain clinical event dates httpscedars.io.
How to cite:
Simon Mantha (2021). CEDARS: Simple and Efficient Pipeline for Electronic Health Record Annotation. R package version 1.90, https://cran.r-project.org/web/packages/CEDARS. Accessed 06 Mar. 2026.
Previous versions and publish date:
1.90 (2021-02-07 11:40)
Other packages that cited CEDARS R package
View CEDARS citation profile
Other R packages that CEDARS depends, imports, suggests or enhances
Functions, R codes and Examples using the CEDARS R package
Some associated functions: add_end_user . aggregate_note . automatic_NLP_processor . batch_processor_db . colorize . commit_patient . complete_case . create_project . db_download . db_upload . delete_end_user . document_processor . dot-onLoad . download_events . end_users . fast_merge_umls . find_model . find_project_name . format_keywords . get_data . get_model . get_patient . get_wrapper . id_expander . initialize_annotations . initialize_notes . initialize_patients . initialize_users . lemma_match . lock_records . lock_records_admin . mark . mongo_connect . mongo_uri_standard . mrconso_upload . mrrel_upload . negation_tagger . negex . negex_processor . negex_token_tagger . negex_upload . parse_query . password_verification . paste_sections . patient_processor_par . patient_roster_update . populate_annotations . populate_dictionaries . populate_notes . populate_query . populate_users . post_data . post_wrapper . pre_search . sanitize . sanitize_query . save_credentials . save_query . save_tags . select_patient . sentence_eval . sentence_search . simulated_patients . standardize_nlp . start_local . terminate_project . terminate_project_new . token_splitter . umls_processor . unlock_records . unlock_records_admin . unlock_user . upload_events . upload_notes . 
Some associated R codes: UMLS_processor.R . accessory_functions.R . data_io.R . database.R . dictionaries.R . negex.R . negex_data.R . search.R . simulated_patients_data.R . text_processing.R . zzz.R .  Full CEDARS package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

openxlsx  
Read, Write and Edit xlsx Files
Simplifies the creation of Excel .xlsx files by providing a high level interface to writing, stylin ...
Download / Learn more Package Citations See dependency  
DatabionicSwarm  
Swarm Intelligence for Self-Organized Clustering
Algorithms implementing populations of agents that interact with one another and sense their environ ...
Download / Learn more Package Citations See dependency  
solitude  
An Implementation of Isolation Forest
Isolation forest is anomaly detection method introduced by the paper Isolation based Anomaly Detecti ...
Download / Learn more Package Citations See dependency  
lbfgs  
Limited-memory BFGS Optimization
A wrapper built around the libLBFGS optimization library by Naoaki Okazaki. The lbfgs package implem ...
Download / Learn more Package Citations See dependency  
mlr3viz  
Visualizations for 'mlr3'
Visualization package of the 'mlr3' ecosystem. It features plots for mlr3 objects such as tasks, le ...
Download / Learn more Package Citations See dependency  
EMVS  
The Expectation-Maximization Approach to Bayesian Variable Selection
An efficient expectation-maximization algorithm for fitting Bayesian spike-and-slab regularization p ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,376

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA