Other packages > Find by keyword >

CEDARS  

Simple and Efficient Pipeline for Electronic Health Record Annotation
View on CRAN: Click here


Download and install CEDARS package within the R console
Install from CRAN:
install.packages("CEDARS")

Install from Github:
library("remotes")
install_github("cran/CEDARS")

Install by package version:
library("remotes")
install_version("CEDARS", "1.90")



Attach the package and use:
library("CEDARS")
Maintained by
Simon Mantha
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-02-07
Latest Update: 2023-08-31
Description:
Streamlined annotation pipeline for collection and aggregation of time-to-event data in retrospective clinical studies. CEDARS aims to systematize and accelerate the review of electronic health record EHR corpora. It accomplishes those goals by deploying natural language processing as a tool to assist detection and characterization of clinical events by human abstractors. The online user manual presents the necessary steps to install CEDARS process EHR corpora and obtain clinical event dates httpscedars.io.
How to cite:
Simon Mantha (2021). CEDARS: Simple and Efficient Pipeline for Electronic Health Record Annotation. R package version 1.90, https://cran.r-project.org/web/packages/CEDARS. Accessed 21 Dec. 2024.
Previous versions and publish date:
1.90 (2021-02-07 11:40)
Other packages that cited CEDARS R package
View CEDARS citation profile
Other R packages that CEDARS depends, imports, suggests or enhances
Functions, R codes and Examples using the CEDARS R package
Some associated functions: add_end_user . aggregate_note . automatic_NLP_processor . batch_processor_db . colorize . commit_patient . complete_case . create_project . db_download . db_upload . delete_end_user . document_processor . dot-onLoad . download_events . end_users . fast_merge_umls . find_model . find_project_name . format_keywords . get_data . get_model . get_patient . get_wrapper . id_expander . initialize_annotations . initialize_notes . initialize_patients . initialize_users . lemma_match . lock_records . lock_records_admin . mark . mongo_connect . mongo_uri_standard . mrconso_upload . mrrel_upload . negation_tagger . negex . negex_processor . negex_token_tagger . negex_upload . parse_query . password_verification . paste_sections . patient_processor_par . patient_roster_update . populate_annotations . populate_dictionaries . populate_notes . populate_query . populate_users . post_data . post_wrapper . pre_search . sanitize . sanitize_query . save_credentials . save_query . save_tags . select_patient . sentence_eval . sentence_search . simulated_patients . standardize_nlp . start_local . terminate_project . terminate_project_new . token_splitter . umls_processor . unlock_records . unlock_records_admin . unlock_user . upload_events . upload_notes . 
Some associated R codes: UMLS_processor.R . accessory_functions.R . data_io.R . database.R . dictionaries.R . negex.R . negex_data.R . search.R . simulated_patients_data.R . text_processing.R . zzz.R .  Full CEDARS package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

CIFsmry  
Weighted summary of cumulative incidence functions
Estimate of cumulative incidence function in two samples. Provide weighted summary statistics based ...
Download / Learn more Package Citations See dependency  
helda  
Preprocess Data and Get Better Insights from Machine Learning Models
The main focus is on preprocessing and data visualization of machine learning models performances.So ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
batteryreduction  
An R Package for Data Reduction by Battery Reduction
Battery reduction is a method used in data reduction. It uses Gram-Schmidt orthogonal rotations to f ...
Download / Learn more Package Citations See dependency  
condGEE  
Parameter Estimation in Conditional GEE for Recurrent Event Gap Times
Solves for the mean parameters, the variance parameter, and their asymptotic variance in a condition ...
Download / Learn more Package Citations See dependency  
SEIRfansy  
Extended Susceptible-Exposed-Infected-Recovery Model
Extended Susceptible-Exposed-Infected-Recovery Model for handling high false negative rate and symp ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA