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CBASSED50  

Process CBASS-Derived PAM Data
View on CRAN: Click here


Download and install CBASSED50 package within the R console
Install from CRAN:
install.packages("CBASSED50")

Install from Github:
library("remotes")
install_github("cran/CBASSED50")

Install by package version:
library("remotes")
install_version("CBASSED50", "0.2.0")



Attach the package and use:
library("CBASSED50")
Maintained by
Luigi Colin
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-06-06
Latest Update: 2025-06-06
Description:
Tools to process CBASS-derived PAM data efficiently. Minimal requirements are PAM-based photosynthetic efficiency data (or data from any other continuous variable that changes with temperature, e.g. relative bleaching scores) from 4 coral samples (nubbins) subjected to 4 temperature profiles of at least 2 colonies from 1 coral species from 1 site. Please refer to the following CBASS (Coral Bleaching Automated Stress System) papers for in-depth information regarding CBASS acute thermal stress assays, experimental design considerations, and ED5/ED50/ED95 thermal parameters: Nicolas R. Evensen et al. (2023) <doi:10.1002/lom3.10555> Christian R. Voolstra et al. (2020) <doi:10.1111/gcb.15148> Christian R. Voolstra et al. (2025) <doi:10.1146/annurev-marine-032223-024511>.
How to cite:
Luigi Colin (2025). CBASSED50: Process CBASS-Derived PAM Data. R package version 0.2.0, https://cran.r-project.org/web/packages/CBASSED50. Accessed 05 Jun. 2026.
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Complete documentation for CBASSED50
Functions, R codes and Examples using the CBASSED50 R package
Full CBASSED50 package functions and examples
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