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CB2
View on CRAN: Click
here
Download and install CB2 package within the R console
Install from CRAN:
install.packages("CB2")
Install from Github:
library("remotes")
install_github("cran/CB2")
Install by package version:
library("remotes")
install_version("CB2", "1.3.4")
Attach the package and use:
library("CB2")
Maintained by
Hyun-Hwan Jeong
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-02-11
Latest Update: 2020-07-24
Description:
Provides functions for hit gene identification and quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis.
Details are in Jeong et al. (2019) and Baggerly et al. (2003) .
How to cite:
Hyun-Hwan Jeong (2019). CB2: CRISPR Pooled Screen Analysis using Beta-Binomial Test. R package version 1.3.4, https://cran.r-project.org/web/packages/CB2. Accessed 21 Nov. 2024.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for CB2
Functions, R codes and Examples using
the CB2 R package
Some associated functions: Evers_CRISPRn_RT112 . Sanson_CRISPRn_A375 . calc_mappability . fit_ab . get_CPM . join_count_and_design . measure_gene_stats . measure_sgrna_stats . plot_PCA . plot_corr_heatmap . plot_count_distribution . plot_dotplot . quant . run_estimation . run_sgrna_quant .
Some associated R codes: RcppExports.R . data.R . helpers.R . utils.R . Full CB2 package functions and examples
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