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CASMAP  

Detection of Statistically Significant Combinations of SNPs in Association Mapping
View on CRAN: Click here


Download and install CASMAP package within the R console
Install from CRAN:
install.packages("CASMAP")

Install from Github:
library("remotes")
install_github("cran/CASMAP")

Install by package version:
library("remotes")
install_version("CASMAP", "0.6.1")



Attach the package and use:
library("CASMAP")
Maintained by
Dean Bodenham
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-07-05
Latest Update: 2020-05-05
Description:
A significant pattern mining-based toolbox for region-based genome-wide association studies and higher-order epistasis analyses, implementing the methods described in Llinares-L
How to cite:
Dean Bodenham (2018). CASMAP: Detection of Statistically Significant Combinations of SNPs in Association Mapping. R package version 0.6.1, https://cran.r-project.org/web/packages/CASMAP. Accessed 25 Aug. 2026.
Previous versions and publish date:
0.5.9 (2018-07-05 10:30), 0.6.0 (2018-07-18 15:40), 0.6.1 (2020-05-05 20:10), (2026-07-09 07:59)
Other packages that cited CASMAP R package
View CASMAP citation profile
Other R packages that CASMAP depends, imports, suggests or enhances
Complete documentation for CASMAP
Functions, R codes and Examples using the CASMAP R package
Some associated functions: CASMAP-class . CASMAPenv . SignificantIntervalSearchChi-class . SignificantIntervalSearchExact-class . SignificantIntervalSearchFastCmh-class . SignificantItemsetSearchFacs-class . checkIsBoolean . getExampleCovariatesFilename . getExampleDataFilename . getExampleLabelsFilename . getExampleSignificantRegionsFilename . getHigherOrderEpistasisString . getMinModeLength . getParentFunctionName . getRegionGWASString . isHigherOrderEpistasisString . isInOpenInterval . isRegionGWASString . lib_delete_search_chi . lib_delete_search_e . lib_delete_search_facs . lib_delete_search_fastcmh . lib_execute_int . lib_execute_iset . lib_filter_intervals_write_to_file . lib_get_filtered_intervals . lib_get_result_facs . lib_get_result_fais . lib_get_result_int . lib_get_result_iset . lib_get_significant_intervals . lib_get_significant_itemsets . lib_new_search_chi . lib_new_search_e . lib_new_search_facs . lib_new_search_fastcmh . lib_profiler_write_to_file . lib_pvals_significant_ints_write_to_file . lib_pvals_significant_isets_write_to_file . lib_pvals_testable_ints_write_to_file . lib_pvals_testable_isets_write_to_file . lib_read_covariates_file_facs . lib_read_covariates_file_fastcmh . lib_read_eth_files . lib_read_eth_files_with_cov_facs . lib_read_eth_files_with_cov_fastcmh . lib_read_plink_files . lib_read_plink_files_with_cov_facs . lib_read_plink_files_with_cov_fastcmh . lib_summary_write_to_file_facs . lib_summary_write_to_file_fais . lib_summary_write_to_file_fastcmh . lib_write_eth_files_int . lib_write_eth_files_iset . lib_write_eth_files_with_cov_facs . lib_write_eth_files_with_cov_fastcmh . m_SignificantFeaturesSearch-class . m_SignificantFeaturesSearchWithCovariates-class . m_SignificantIntervalSearch-class . m_SignificantIntervalSearchFais-class . m_SignificantItemsetSearch-class . modeErrorMessage . modeLengthErrorMessage . modeNeedsMoreChars . 
Some associated R codes: RcppExports.R . data.R . utils.R . wrapper.R . zzz.R .  Full CASMAP package functions and examples
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