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BuyseTest  

Generalized Pairwise Comparisons
View on CRAN: Click here


Download and install BuyseTest package within the R console
Install from CRAN:
install.packages("BuyseTest")

Install from Github:
library("remotes")
install_github("cran/BuyseTest")

Install by package version:
library("remotes")
install_version("BuyseTest", "3.0.2")



Attach the package and use:
library("BuyseTest")
Maintained by
Brice Ozenne
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-08-17
Latest Update: 2023-03-20
Description:
Implementation of the Generalized Pairwise Comparisons (GPC) as defined in Buyse (2010) for complete observations, and extended in Peron (2018) to deal with right-censoring. GPC compare two groups of observations (intervention vs. control group) regarding several prioritized endpoints to estimate the probability that a random observation drawn from one group performs better than a random observation drawn from the other group (Mann-Whitney parameter). The net benefit and win ratio statistics, i.e. the difference and ratio between the probabilities relative to the intervention and control groups, can then also be estimated. Confidence intervals and p-values are obtained based on asymptotic results (Ozenne 2021 ), non-parametric bootstrap, or permutations. The software enables the use of thresholds of minimal importance difference, stratification, non-prioritized endpoints (O Brien test), and can handle right-censoring and competing-risks.
How to cite:
Brice Ozenne (2016). BuyseTest: Generalized Pairwise Comparisons. R package version 3.0.2, https://cran.r-project.org/web/packages/BuyseTest
Previous versions and publish date:
1.0 (2016-08-17 10:40), 1.3.2 (2018-05-29 09:28), 1.5.0 (2018-09-26 16:20), 1.6 (2018-10-17 12:30), 1.7 (2019-01-16 10:00), 1.8.3 (2020-01-16 15:50), 1.8.4 (2020-02-14 14:50), 1.8.5 (2020-03-03 13:20), 1.8 (2019-11-13 17:50), 2.1.0 (2020-04-26 17:20), 2.1.3 (2020-05-07 17:10), 2.2.1 (2021-01-05 21:40), 2.2.3 (2021-01-12 11:20), 2.2.6 (2021-03-16 20:30), 2.3.0 (2021-04-23 18:50), 2.3.5 (2021-10-25 09:00), 2.3.9 (2022-01-03 12:30), 2.3.10 (2022-01-11 10:02), 2.3.11 (2022-03-28 08:50), 2.4.0 (2023-03-20 23:30)
Other packages that cited BuyseTest R package
View BuyseTest citation profile
Other R packages that BuyseTest depends, imports, suggests or enhances
Functions, R codes and Examples using the BuyseTest R package
Some associated functions: BuyseMultComp . BuyseTTEM . BuyseTest-package . BuyseTest . BuyseTest.options-class . BuyseTest.options-methods . BuyseTest.options . GPC_cpp . S4BuysePower-class . S4BuysePower-show . S4BuysePower-summary . S4BuyseTest-class . S4BuyseTest-coef . S4BuyseTest-confint . S4BuyseTest-getCount . S4BuyseTest-getIid . S4BuyseTest-getPairScore . S4BuyseTest-getPseudovalue . S4BuyseTest-getSurvival . S4BuyseTest-sensitivity . S4BuyseTest-show . S4BuyseTest-summary . as.data.table.performance . auc . autoplot.sensitivity . boot2pvalue . calcIntegralSurv2_cpp . coef.BuyseTestAuc . coef.BuyseTestBrier . confint.BuyseTestAuc . confint.BuyseTestBrier . constStrata . discreteRoot . dot-calcIntegralCif_cpp . dot-calcIntegralSurv_cpp . dot-colCenter_cpp . dot-colMultiply_cpp . dot-colScale_cpp . dot-information.logit . dot-rowCenter_cpp . dot-rowCumProd_cpp . dot-rowCumSum_cpp . dot-rowMultiply_cpp . dot-rowScale_cpp . dot-score.logit . dot-vcov.logit . iid.BuyseTestAuc . iid.BuyseTestBrier . iid.prodlim . internal-initialization . internal-print . performance . performanceResample . pnormexp . pnormweibull . powerBuyseTest . predict.BuyseTTEM . predict.logit . qnormexp . qnormweibull . simCompetingRisks . simulation . testArgs . validFCTs . 
Some associated R codes: 0-onLoad.R . 1-setGeneric.R . BuyseMultComp.R . BuyseTTEM.R . BuyseTest-Peron.R . BuyseTest-check.R . BuyseTest-inference.R . BuyseTest-initialization.R . BuyseTest-package.R . BuyseTest-print.R . BuyseTest.R . BuyseTest.options.R . PairScore.R . RcppExports.R . S4-BuysePower-show.R . S4-BuysePower-summary.R . S4-BuysePower.R . S4-BuyseTest-coef.R . S4-BuyseTest-confint.R . S4-BuyseTest-get.R . S4-BuyseTest-sensitivity.R . S4-BuyseTest-show.R . S4-BuyseTest-summary.R . S4-BuyseTest.R . S4-BuyseTest.options.R . as.data.table.performance.R . auc.R . autoplot.sensitivity.R . brier.R . constStrata.R . discreteRoot.R . iid.prodlim.R . normexp.R . performance.R . performanceResample.R . powerBuyseTest.R . predict.logit.R . simBuyseTest.R . simCompetingRisks.R . valid.R .  Full BuyseTest package functions and examples
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