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BoolNet  

Construction, Simulation and Analysis of Boolean Networks
View on CRAN: Click here


Download and install BoolNet package within the R console
Install from CRAN:
install.packages("BoolNet")

Install from Github:
library("remotes")
install_github("cran/BoolNet")

Install by package version:
library("remotes")
install_version("BoolNet", "2.1.9")



Attach the package and use:
library("BoolNet")
Maintained by
Hans A. Kestler
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2009-11-16
Latest Update: 2023-10-02
Description:
Functions to reconstruct, generate, and simulate synchronous, asynchronous, probabilistic, and temporal Boolean networks. Provides also functions to analyze and visualize attractors in Boolean networks .
How to cite:
Hans A. Kestler (2009). BoolNet: Construction, Simulation and Analysis of Boolean Networks. R package version 2.1.9, https://cran.r-project.org/web/packages/BoolNet
Previous versions and publish date:
1.3 (2009-11-16 08:44), 1.4 (2010-02-28 21:58), 1.41 (2010-05-22 07:22), 1.42 (2010-06-16 17:07), 1.43 (2011-01-24 19:31), 1.44 (2011-04-11 17:35), 1.45 (2011-11-22 16:55), 1.46 (2012-01-17 20:45), 1.50 (2012-04-10 20:35), 1.51 (2012-06-11 16:56), 1.60 (2012-12-12 17:22), 1.61 (2013-03-20 09:34), 1.62 (2013-12-03 17:47), 1.63 (2014-03-31 13:04), 2.0.1 (2014-08-26 18:01), 2.0.2 (2014-12-11 17:23), 2.0 (2014-07-17 09:04), 2.1.0 (2015-02-23 18:48), 2.1.1 (2015-02-25 11:52), 2.1.3 (2016-11-21 12:23), 2.1.4 (2018-06-07 19:44), 2.1.5 (2019-04-16 15:05), 2.1.7 (2022-09-04 16:40), 2.1.8 (2023-02-27 14:52)
Other packages that cited BoolNet R package
View BoolNet citation profile
Other R packages that BoolNet depends, imports, suggests or enhances
Functions, R codes and Examples using the BoolNet R package
Some associated functions: BoolNet-package . attractorsToLaTeX . binarizeTimeSeries . cellcycle . chooseNetwork . examplePBN . fixGenes . generateRandomNKNetwork . generateState . generateTimeSeries . generationFunctions . getAttractorSequence . getAttractors . getBasinOfAttraction . getPathToAttractor . getStateSummary . getTransitionProbabilities . getTransitionTable . igf . loadBioTapestry . loadNetwork . loadSBML . markovSimulation . perturbNetwork . perturbTrajectories . plotAttractors . plotNetworkWiring . plotPBNTransitions . plotSequence . plotStateGraph . print.AttractorInfo . print.BooleanNetwork . print.MarkovSimulation . print.ProbabilisticBooleanNetwork . print.SymbolicSimulation . print.TransitionTable . reconstructNetwork . saveNetwork . sequenceToLaTeX . simplifyNetwork . simulateSymbolicModel . stateTransition . symbolicToTruthTable . testNetworkProperties . toPajek . toSBML . truthTableToSymbolic . yeastTimeSeries . 
Some associated R codes: attractorsToLaTeX.R . binarizeTimeSeries.R . chooseNetwork.R . edgeDetector.R . fixGenes.R . generateRandomNKNetwork.R . generateRandomStartStates.R . generateState.R . generateTimeSeries.R . getAttractorSequence.R . getAttractors.R . getBasinOfAttraction.R . getPathToAttractor.R . getStateSummary.R . getTransitionProbabilities.R . getTransitionTable.R . helpers.R . loadBioTapestry.R . loadNetwork.R . loadSBML.R . markovSimulation.R . parseBooleanFunction.R . perturbNetwork.R . perturbTrajectories.R . plotAttractors.R . plotNetworkWiring.R . plotPBNTransitions.R . plotSequence.R . plotStateGraph.R . print.AttractorInfo.R . print.BooleanNetwork.R . print.BooleanStateInfo.R . print.MarkovSimulation.R . print.ProbabilisticBooleanNetwork.R . print.SymbolicBooleanNetwork.R . print.SymbolicSimulation.R . print.TransitionTable.R . reconstructNetwork.R . saveNetwork.R . scanStatistic.R . sequenceToLaTeX.R . simplifyNetwork.R . simulateSymbolicModel.R . stateTransition.R . symbolicToTruthTable.R . testNetworkProperties.R . toPajek.R . toSBML.R . truthTableToSymbolic.R . zeta.R .  Full BoolNet package functions and examples
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