Other packages > Find by keyword >

BoolNet  

Construction, Simulation and Analysis of Boolean Networks
View on CRAN: Click here


Download and install BoolNet package within the R console
Install from CRAN:
install.packages("BoolNet")

Install from Github:
library("remotes")
install_github("cran/BoolNet")

Install by package version:
library("remotes")
install_version("BoolNet", "2.1.9")



Attach the package and use:
library("BoolNet")
Maintained by
Hans A. Kestler
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2009-11-16
Latest Update: 2023-10-02
Description:
Functions to reconstruct, generate, and simulate synchronous, asynchronous, probabilistic, and temporal Boolean networks. Provides also functions to analyze and visualize attractors in Boolean networks .
How to cite:
Hans A. Kestler (2009). BoolNet: Construction, Simulation and Analysis of Boolean Networks. R package version 2.1.9, https://cran.r-project.org/web/packages/BoolNet. Accessed 28 Oct. 2026.
Previous versions and publish date:
1.3 (2009-11-16 08:44), 1.4 (2010-02-28 21:58), 1.41 (2010-05-22 07:22), 1.42 (2010-06-16 17:07), 1.43 (2011-01-24 19:31), 1.44 (2011-04-11 17:35), 1.45 (2011-11-22 16:55), 1.46 (2012-01-17 20:45), 1.50 (2012-04-10 20:35), 1.51 (2012-06-11 16:56), 1.60 (2012-12-12 17:22), 1.61 (2013-03-20 09:34), 1.62 (2013-12-03 17:47), 1.63 (2014-03-31 13:04), 2.0.1 (2014-08-26 18:01), 2.0.2 (2014-12-11 17:23), 2.0 (2014-07-17 09:04), 2.1.0 (2015-02-23 18:48), 2.1.1 (2015-02-25 11:52), 2.1.3 (2016-11-21 12:23), 2.1.4 (2018-06-07 19:44), 2.1.5 (2019-04-16 15:05), 2.1.7 (2022-09-04 16:40), 2.1.8 (2023-02-27 14:52), (2026-07-09 07:59)
Other packages that cited BoolNet R package
View BoolNet citation profile
Other R packages that BoolNet depends, imports, suggests or enhances
Complete documentation for BoolNet
Functions, R codes and Examples using the BoolNet R package
Some associated functions: BoolNet-package . attractorsToLaTeX . binarizeTimeSeries . cellcycle . chooseNetwork . examplePBN . fixGenes . generateRandomNKNetwork . generateState . generateTimeSeries . generationFunctions . getAttractorSequence . getAttractors . getBasinOfAttraction . getPathToAttractor . getStateSummary . getTransitionProbabilities . getTransitionTable . igf . loadBioTapestry . loadNetwork . loadSBML . markovSimulation . perturbNetwork . perturbTrajectories . plotAttractors . plotNetworkWiring . plotPBNTransitions . plotSequence . plotStateGraph . print.AttractorInfo . print.BooleanNetwork . print.MarkovSimulation . print.ProbabilisticBooleanNetwork . print.SymbolicSimulation . print.TransitionTable . reconstructNetwork . saveNetwork . sequenceToLaTeX . simplifyNetwork . simulateSymbolicModel . stateTransition . symbolicToTruthTable . testNetworkProperties . toPajek . toSBML . truthTableToSymbolic . yeastTimeSeries . 
Some associated R codes: attractorsToLaTeX.R . binarizeTimeSeries.R . chooseNetwork.R . edgeDetector.R . fixGenes.R . generateRandomNKNetwork.R . generateRandomStartStates.R . generateState.R . generateTimeSeries.R . getAttractorSequence.R . getAttractors.R . getBasinOfAttraction.R . getPathToAttractor.R . getStateSummary.R . getTransitionProbabilities.R . getTransitionTable.R . helpers.R . loadBioTapestry.R . loadNetwork.R . loadSBML.R . markovSimulation.R . parseBooleanFunction.R . perturbNetwork.R . perturbTrajectories.R . plotAttractors.R . plotNetworkWiring.R . plotPBNTransitions.R . plotSequence.R . plotStateGraph.R . print.AttractorInfo.R . print.BooleanNetwork.R . print.BooleanStateInfo.R . print.MarkovSimulation.R . print.ProbabilisticBooleanNetwork.R . print.SymbolicBooleanNetwork.R . print.SymbolicSimulation.R . print.TransitionTable.R . reconstructNetwork.R . saveNetwork.R . scanStatistic.R . sequenceToLaTeX.R . simplifyNetwork.R . simulateSymbolicModel.R . stateTransition.R . symbolicToTruthTable.R . testNetworkProperties.R . toPajek.R . toSBML.R . truthTableToSymbolic.R . zeta.R .  Full BoolNet package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

NPHazardRate  
Nonparametric Hazard Rate Estimation
Provides functions and examples for histogram, kernel (classical, variable bandwidth and transformat ...
Download / Learn more Package Citations See dependency  
ncdf4  
Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files
Provides a high-level R interface to data files written using Unidata's netCDF library (version 4 or ...
Download / Learn more Package Citations See dependency  
msamp  
Estimate Sample Size to Detect Bacterial Contamination in a Product Lot
Estimates the sample size needed to detect microbial contamination in a lot with a user-specified d ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
cats  
Cohort Platform Trial Simulation
Cohort plAtform Trial Simulation whereby every cohort consists of two arms, control and experimenta ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA