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BisqueRNA  

Decomposition of Bulk Expression with Single-Cell Sequencing
View on CRAN: Click here


Download and install BisqueRNA package within the R console
Install from CRAN:
install.packages("BisqueRNA")

Install from Github:
library("remotes")
install_github("cran/BisqueRNA")

Install by package version:
library("remotes")
install_version("BisqueRNA", "1.0.5")



Attach the package and use:
library("BisqueRNA")
Maintained by
Brandon Jew
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-06-19
Latest Update: 2021-05-23
Description:
Provides tools to accurately estimate cell type abundances from heterogeneous bulk expression. A reference-based method utilizes single-cell information to generate a signature matrix and transformation of bulk expression for accurate regression based estimates. A marker-based method utilizes known cell-specific marker genes to measure relative abundances across samples. For more details, see Jew and Alvarez et al (2019) .
How to cite:
Brandon Jew (2019). BisqueRNA: Decomposition of Bulk Expression with Single-Cell Sequencing. R package version 1.0.5, https://cran.r-project.org/web/packages/BisqueRNA. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0.1 (2019-12-15 23:00), 1.0.2 (2020-03-19 06:20), 1.0.3 (2020-05-04 07:20), 1.0.4 (2020-07-18 06:22), 1.0 (2019-06-19 11:30)
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