Other packages > Find by keyword >

BisqueRNA  

Decomposition of Bulk Expression with Single-Cell Sequencing
View on CRAN: Click here


Download and install BisqueRNA package within the R console
Install from CRAN:
install.packages("BisqueRNA")

Install from Github:
library("remotes")
install_github("cran/BisqueRNA")

Install by package version:
library("remotes")
install_version("BisqueRNA", "1.0.5")



Attach the package and use:
library("BisqueRNA")
Maintained by
Brandon Jew
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-06-19
Latest Update:
Description:
Provides tools to accurately estimate cell type abundances from heterogeneous bulk expression. A reference-based method utilizes single-cell information to generate a signature matrix and transformation of bulk expression for accurate regression based estimates. A marker-based method utilizes known cell-specific marker genes to measure relative abundances across samples. For more details, see Jew and Alvarez et al (2019) .
How to cite:
Brandon Jew (2019). BisqueRNA: Decomposition of Bulk Expression with Single-Cell Sequencing. R package version 1.0.5, https://cran.r-project.org/web/packages/BisqueRNA. Accessed 25 Jun. 2026.
Previous versions and publish date:
1.0.1 (2019-12-15 23:00), 1.0.2 (2020-03-19 06:20), 1.0.3 (2020-05-04 07:20), 1.0.4 (2020-07-18 06:22), 1.0.5 (2021-05-23 23:10), 1.0 (2019-06-19 11:30)
Other packages that cited BisqueRNA R package
View BisqueRNA citation profile
Other R packages that BisqueRNA depends, imports, suggests or enhances
Complete documentation for BisqueRNA
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  
edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA