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Bios2cor  

From Biological Sequences and Simulations to Correlation Analysis
View on CRAN: Click here


Download and install Bios2cor package within the R console
Install from CRAN:
install.packages("Bios2cor")

Install from Github:
library("remotes")
install_github("cran/Bios2cor")

Install by package version:
library("remotes")
install_version("Bios2cor", "2.2.2")



Attach the package and use:
library("Bios2cor")
Maintained by
Marie Chabbert
[Scholar Profile | Author Map]
First Published: 2017-08-24
Latest Update: 2022-07-08
Description:
Utilities for computation and analysis of correlation/covariation in multiple sequence alignments and in side chain motions during molecular dynamics simulations. Features include the computation of correlation/covariation scores using a variety of scoring functions between either sequence positions in alignments or side chain dihedral angles in molecular dynamics simulations and utilities to analyze the correlation/covariation matrix through a variety of tools including network representation and principal components analysis. In addition, several utility functions are based on the R graphical environment to provide friendly tools for help in data interpretation. Examples of sequence covariation analysis are provided in: (1) Pele J, Moreau M, Abdi H, Rodien P, Castel H, Chabbert M (2014) and (2) Taddese B, Deniaud M, Garnier A, Tiss A, Guissouma H, Abdi H, Henrion D, Chabbert M (2018) . An example of side chain correlated motion analysis is provided in: Taddese B, Garnier A, Abdi H, Henrion D, Chabbert M (2020) . This work was supported by the French National Research Agency (Grant number: ANR-11-BSV2-026) and by GENCI (Grant number: 100567).
How to cite:
Marie Chabbert (2017). Bios2cor: From Biological Sequences and Simulations to Correlation Analysis. R package version 2.2.2, https://cran.r-project.org/web/packages/Bios2cor. Accessed 08 May. 2025.
Previous versions and publish date:
1.1 (2017-08-24 16:46), 1.2 (2017-09-07 12:53), 2.0 (2019-10-31 12:10), 2.1 (2020-01-30 18:30), 2.2.1 (2022-07-08 11:25), 2.2 (2020-10-02 06:22)
Other packages that cited Bios2cor R package
View Bios2cor citation profile
Other R packages that Bios2cor depends, imports, suggests or enhances
Complete documentation for Bios2cor
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