Other packages > Find by keyword >

Bios2cor  

From Biological Sequences and Simulations to Correlation Analysis
View on CRAN: Click here


Download and install Bios2cor package within the R console
Install from CRAN:
install.packages("Bios2cor")

Install from Github:
library("remotes")
install_github("cran/Bios2cor")

Install by package version:
library("remotes")
install_version("Bios2cor", "2.2.1")



Attach the package and use:
library("Bios2cor")
Maintained by
Marie Chabbert
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-08-24
Latest Update: 2022-07-08
Description:
Utilities for computation and analysis of correlation/covariation in multiple sequence alignments and in side chain motions during molecular dynamics simulations. Features include the computation of correlation/covariation scores using a variety of scoring functions between either sequence positions in alignments or side chain dihedral angles in molecular dynamics simulations and utilities to analyze the correlation/covariation matrix through a variety of tools including network representation and principal components analysis. In addition, several utility functions are based on the R graphical environment to provide friendly tools for help in data interpretation. Examples of sequence covariation analysis are provided in: (1) Pele J, Moreau M, Abdi H, Rodien P, Castel H, Chabbert M (2014) and (2) Taddese B, Deniaud M, Garnier A, Tiss A, Guissouma H, Abdi H, Henrion D, Chabbert M (2018) . An example of side chain correlated motion analysis is provided in: Taddese B, Garnier A, Abdi H, Henrion D, Chabbert M (2020) . This work was supported by the French National Research Agency (Grant number: ANR-11-BSV2-026) and by GENCI (Grant number: 100567).
How to cite:
Marie Chabbert (2017). Bios2cor: From Biological Sequences and Simulations to Correlation Analysis. R package version 2.2.1, https://cran.r-project.org/web/packages/Bios2cor
Previous versions and publish date:
1.1 (2017-08-24 16:46), 1.2 (2017-09-07 12:53), 2.0 (2019-10-31 12:10), 2.1 (2020-01-30 18:30), 2.2.1 (2022-07-08 11:25), 2.2 (2020-10-02 06:22)
Other packages that cited Bios2cor R package
View Bios2cor citation profile
Other R packages that Bios2cor depends, imports, suggests or enhances
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

ftaproxim  
Fault Tree Analysis Based on Proxel Simulation
Calculation and plotting of instantaneous unavailabilities of basic events along with the top event ...
Download / Learn more Package Citations See dependency  
steepness  
Testing Steepness of Dominance Hierarchies
The steepness package computes steepness as a property of dominance hierarchies. Steepness is define ...
Download / Learn more Package Citations See dependency  
mistral  
Methods in Structural Reliability
Various reliability analysis methods for rare event inference (computing failure probability and qua ...
Download / Learn more Package Citations See dependency  
critpath  
Setting the Critical Path in Project Management
Solving the problem of project management using CPM (Critical Path Method), PERT (Program Evaluation ...
Download / Learn more Package Citations See dependency  
rdbnomics  
Download DBnomics Data
R access to hundreds of millions data series from DBnomics API (). ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

22,114

R Packages

188,080

Dependencies

55,244

Author Associations

22,115

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns