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BiodiversityR  

Package for Community Ecology and Suitability Analysis
View on CRAN: Click here


Download and install BiodiversityR package within the R console
Install from CRAN:
install.packages("BiodiversityR")

Install from Github:
library("remotes")
install_github("cran/BiodiversityR")

Install by package version:
library("remotes")
install_version("BiodiversityR", "2.17-1.1")



Attach the package and use:
library("BiodiversityR")
Maintained by
Roeland Kindt
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2007-07-28
Latest Update: 2023-05-27
Description:
Graphical User Interface (via the R-Commander) and utility functions (often based on the vegan package) for statistical analysis of biodiversity and ecological communities, including species accumulation curves, diversity indices, Renyi profiles, GLMs for analysis of species abundance and presence-absence, distance matrices, Mantel tests, and cluster, constrained and unconstrained ordination analysis. A book on biodiversity and community ecology analysis is available for free download from the website. In 2012, methods for (ensemble) suitability modelling and mapping were expanded in the package.
How to cite:
Roeland Kindt (2007). BiodiversityR: Package for Community Ecology and Suitability Analysis. R package version 2.17-1.1, https://cran.r-project.org/web/packages/BiodiversityR. Accessed 18 Feb. 2025.
Previous versions and publish date:
1.0 (2007-07-28 18:48), 1.1 (2008-01-14 15:13), 1.2 (2008-05-13 20:20), 1.3 (2009-07-03 15:13), 1.4.2 (2009-11-30 15:27), 1.4 (2009-10-23 08:40), 1.5 (2011-01-17 09:42), 1.6 (2011-09-04 19:10), 2.0 (2012-12-19 07:33), 2.1 (2013-01-31 11:02), 2.2 (2013-03-15 09:02), 2.3-6 (2013-06-28 09:58), 2.3 (2013-04-11 14:01), 2.4-1 (2014-01-20 09:36), 2.4-4 (2014-05-15 12:53), 2.5-1 (2014-11-23 08:33), 2.5-2 (2015-04-16 08:44), 2.5-3 (2015-07-23 06:57), 2.5-4 (2015-09-24 01:12), 2.6-1 (2016-01-24 15:45), 2.7-0 (2016-03-25 20:00), 2.7-1 (2016-04-19 00:39), 2.7-2 (2016-08-29 14:16), 2.8-0 (2017-01-08 15:42), 2.8-2 (2017-05-09 08:59), 2.8-3 (2017-06-22 13:04), 2.8-4 (2017-09-05 19:06), 2.9-1 (2018-02-11 05:15), 2.9-2 (2018-02-28 12:43), 2.10-1 (2018-07-14 20:00), 2.11-1 (2019-02-01 12:13), 2.11-2 (2019-06-29 15:00), 2.11-3 (2019-10-03 08:50), 2.12-1 (2020-07-29 07:32), 2.12-2 (2020-11-19 15:20), 2.12-3 (2020-12-17 07:20), 2.13-1 (2021-04-20 16:20), 2.14-1 (2022-01-06 07:20), 2.14-2.1 (2022-07-04 13:29), 2.14-2 (2022-04-29 12:20), 2.14-3 (2022-08-06 16:10), 2.14-4 (2022-09-08 11:33), 2.15-1 (2023-01-06 11:00), 2.15-2 (2023-05-27 12:50), 2.15-3 (2023-09-18 10:12), 2.15-4 (2023-10-22 13:10), 2.16-1 (2024-03-16 10:10), 2.17-1 (2025-01-10 15:10)
Other packages that cited BiodiversityR R package
View BiodiversityR citation profile
Other R packages that BiodiversityR depends, imports, suggests or enhances
Complete documentation for BiodiversityR
Functions, R codes and Examples using the BiodiversityR R package
Some associated functions: BCI.env . BiodiversityR-package . BiodiversityR.changeLog . BiodiversityRGUI . CAPdiscrim . CucurbitaClim . NMSrandom . PCAsignificance . accumresult . add.spec.scores . balanced.specaccum . caprescale . crosstabanalysis . deviancepercentage . dist.eval . dist.zeroes . distdisplayed . disttransform . diversityresult . ensemble.PET.season . ensemble.PET.seasons . ensemble.analogue . ensemble.batch . ensemble.bioclim.graph . ensemble.bioclim . ensemble.blockCV . ensemble.concave . ensemble.dummy.variables . ensemble.ecocrop . ensemble.envirem . ensemble.evaluate . ensemble.novel . ensemble . ensemble.raster . ensemble.red . ensemble.spatialThin . ensemble.terra . ensemble.zones . evaluation.strip . faramea . ifri . importancevalue . loaded.citations . makecommunitydataset . multiconstrained . nested.anova.dbrda . nnetrandom . ordicoeno . ordisymbol . radfitresult . rankabundance . removeNAcomm . renyiresult . sites.long . spatialsample . transfgradient . transfspecies . warcom . warenv . 
Some associated R codes: BiodiversityR.changeLog.R . BiodiversityRGUI.R . CAPdiscrim.R . NMSrandom.R . PCAsignificance.R . accumcomp.R . accumplot.R . accumresult.R . add.spec.scores.R . balanced.specaccum.R . caprescale.R . check.datasets.R . check.ordiscores.R . crosstabanalysis.R . deviancepercentage.R . dist.eval.R . dist.zeroes.R . distdisplayed.R . disttransform.R . diversitycomp.R . diversityresult.R . diversityvariables.R . ensemble.PET.season.R . ensemble.PET.seasons.R . ensemble.VIF.R . ensemble.accepted.categories.R . ensemble.analogue.R . ensemble.area.R . ensemble.batch.R . ensemble.batch.presence.R . ensemble.bioclim.R . ensemble.bioclim.graph.R . ensemble.blockCV.R . ensemble.calibrate.models.R . ensemble.calibrate.models.gbm.R . ensemble.calibrate.models.nnet.R . ensemble.calibrate.weights.R . ensemble.centroids.R . ensemble.chull.R . ensemble.concave.R . ensemble.drop1.R . ensemble.dummy.variables.R . ensemble.ecocrop.R . ensemble.envirem.R . ensemble.environmentalThin.R . ensemble.evaluate.R . ensemble.formulae.R . ensemble.habitat.change.R . ensemble.mean.R . ensemble.novel.R . ensemble.outlierThin.R . ensemble.pairs.R . ensemble.plot.R . ensemble.raster.R . ensemble.red.R . ensemble.simplified.categories.R . ensemble.spatialThin.R . ensemble.strategy.R . ensemble.terra.R . ensemble.threshold.R . ensemble.weights.R . ensemble.zones.R . evaluation.strip.data.R . evaluation.strip.plot.R . import.from.Access.R . import.from.Excel.R . importancevalue.R . loaded.citations.R . makecommunitydataset.R . multiconstrained.R . nested.anova.dbrda.R . nested.npmanova.R . nnetrandom.R . ordibubble.R . ordicluster2.R . ordicoeno.R . ordiequilibriumcircle.R . ordinearest.R . ordisymbol.R . ordivector.R . prepare.bioenv.R . radfitresult.R . rankabuncomp.R . rankabundance.R . rankabunplot.R . removeNAcomm.R . removeNAenv.R . removezerospecies.R . renyiaccumresult.R . renyicomp.R . renyiplot.R . renyiresult.R . replaceNAcomm.R . same.sites.R . sites.long.R . spatialsample.R . stackcommunitydataset.R . subsetcomm.R . zzz.R .  Full BiodiversityR package functions and examples
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