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BioUtils  

Biological Data Analysis and Visualization
View on CRAN: Click here


Download and install BioUtils package within the R console
Install from CRAN:
install.packages("BioUtils")

Install from Github:
library("remotes")
install_github("cran/BioUtils")

Install by package version:
library("remotes")
install_version("BioUtils", "0.1.3")



Attach the package and use:
library("BioUtils")
Maintained by
Spencer Treadway
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-05-22
Latest Update: 2026-05-22
Description:
Provides tools for the analysis and visualization of gene expression data from the NCBI Gene Expression Omnibus (GEO). Implements a complete workflow including data import, quality control, differential expression analysis, co-expression network analysis, pathway enrichment, and multi-gene biomarker discovery. Differential expression uses the empirical Bayes moderated t-statistic of Smyth (2004) <doi:10.2202/1544-6115.1027>. Gene set enrichment analysis follows Subramanian et al. (2005) <doi:10.1073/pnas.0506580102>. Multi-gene biomarker selection uses the LASSO method of Tibshirani (1996) <doi:10.1111/j.2517-6161.1996.tb02080.x>. Effect sizes are computed as Cohen's d following Cohen (1988).
How to cite:
Spencer Treadway (2026). BioUtils: Biological Data Analysis and Visualization. R package version 0.1.3, https://cran.r-project.org/web/packages/BioUtils. Accessed 21 Aug. 2026.
Previous versions and publish date:
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Complete documentation for BioUtils
Functions, R codes and Examples using the BioUtils R package
Full BioUtils package functions and examples
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