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BioM2
View on CRAN: Click
here
Download and install BioM2 package within the R console
Install from CRAN:
install.packages("BioM2")
Install from Github:
library("remotes")
install_github("cran/BioM2")
Install by package version:
library("remotes")
install_version("BioM2", "1.1.1")
Attach the package and use:
library("BioM2")
Maintained by
Shunjie Zhang
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-09-21
Latest Update: 2024-02-29
Description:
Biologically Explainable Machine Learning Framework for Phenotype Prediction using omics data described in Chen and Schwarz (2017) .Identifying reproducible and interpretable biological patterns from high-dimensional omics data is a critical factor in understanding the risk mechanism of complex disease. As such, explainable machine learning can offer biological insight in addition to personalized risk scoring.In this process, a feature space of biological pathways will be generated, and the feature space can also be subsequently analyzed using WGCNA (Described in Horvath and Zhang (2005) and Langfelder and Horvath (2008) ) methods.
How to cite:
Shunjie Zhang (2023). BioM2: Biologically Explainable Machine Learning Framework. R package version 1.1.1, https://cran.r-project.org/web/packages/BioM2. Accessed 29 Apr. 2025.
Previous versions and publish date:
1.0.1 (2023-09-27 09:30), 1.0.2 (2023-10-25 10:30), 1.0.3 (2024-01-11 01:53), 1.0.4 (2024-02-29 11:32), 1.0.5 (2024-03-10 05:50), 1.0.6 (2024-05-16 12:00), 1.0.7 (2024-06-09 10:50), 1.0.8 (2024-07-18 06:30), 1.0.9 (2024-08-01 10:40), 1.0.10 (2024-08-20 10:00), 1.0 (2023-09-21 20:10), 1.1.0 (2024-09-20 14:10)
Other packages that cited BioM2 R package
View BioM2 citation profile
Other R packages that BioM2 depends,
imports, suggests or enhances
Complete documentation for BioM2
Functions, R codes and Examples using
the BioM2 R package
Some associated functions: AddUnmapped . BioM2 . FindParaModule . GO2ALLEGS_BP . GO_Ancestor . GO_Ancestor_exact . MethylAnno . MethylData_Test . PathwaysModule . PlotCorModule . PlotPathFearture . PlotPathInner . PlotPathNet . ShowModule . Stage1_FeartureSelection . Stage2_FeartureSelection . TransAnno . TransData_Test . VisMultiModule . baseModel .
Some associated R codes: BioM2.R . data.R . Full BioM2 package functions and examples
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