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BioGSP  

Biological Graph Signal Processing for Spatial Data Analysis
View on CRAN: Click here


Download and install BioGSP package within the R console
Install from CRAN:
install.packages("BioGSP")

Install from Github:
library("remotes")
install_github("cran/BioGSP")

Install by package version:
library("remotes")
install_version("BioGSP", "1.0.0")



Attach the package and use:
library("BioGSP")
Maintained by
Yuzhou Chang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-02-02
Latest Update: 2026-02-02
Description:
Implementation of Graph Signal Processing (GSP) methods including Spectral Graph Wavelet Transform (SGWT) for analyzing spatial patterns in biological data. Based on Hammond, Vandergheynst, and Gribonval (2011) <doi:10.1016/j.acha.2010.04.005>. Provides tools for multi-scale analysis of biology spatial signals, including forward and inverse transforms, energy analysis, and visualization functions tailored for biological applications. Biological application example is on Stephanie, Yao, Yuzhou (2024) <doi:10.1101/2024.12.20.629650>.
How to cite:
Yuzhou Chang (2026). BioGSP: Biological Graph Signal Processing for Spatial Data Analysis. R package version 1.0.0, https://cran.r-project.org/web/packages/BioGSP. Accessed 08 Aug. 2026.
Previous versions and publish date:
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Other packages that cited BioGSP R package
View BioGSP citation profile
Other R packages that BioGSP depends, imports, suggests or enhances
Complete documentation for BioGSP
Functions, R codes and Examples using the BioGSP R package
Full BioGSP package functions and examples
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