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BinMat
View on CRAN: Click
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Download and install BinMat package within the R console
Install from CRAN:
install.packages("BinMat")
Install from Github:
library("remotes")
install_github("cran/BinMat")
Install by package version:
library("remotes")
install_version("BinMat", "0.1.5")
Attach the package and use:
library("BinMat")
Maintained by
Clarke van Steenderen
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[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-02-29
Latest Update: 2022-03-06
Description:
A molecular genetics tool that processes binary data from fragment analysis. It consolidates replicate sample pairs, outputs summary statistics, and produces hierarchical clustering trees and nMDS plots. This package was developed from the publication available here: . The GUI version of this package is available on the R Shiny online server at: or it is accessible via GitHub by typing: shiny::runGitHub("BinMat", "clarkevansteenderen") into the console in R. Two real-world datasets accompany the package: an AFLP dataset of Bunias orientalis samples from Tewes et. al. (2017) , and an ISSR dataset of Nymphaea specimens from Reid et. al. (2021) . The authors of these publications are thanked for allowing the use of their data.
How to cite:
Clarke van Steenderen (2020). BinMat: Processes Binary Data Obtained from Fragment Analysis (Such as AFLPs, ISSRs, and RFLPs). R package version 0.1.5, https://cran.r-project.org/web/packages/BinMat. Accessed 22 Dec. 2024.
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imports, suggests or enhances
Complete documentation for BinMat
Functions, R codes and Examples using
the BinMat R package
Some associated functions: BinMatInput_ordination . BinMatInput_reps . bunias_orientalis . check.data . consolidate . errors . group.names . nmds . nymphaea . peak.remove . peaks.consolidated . peaks.original . scree . shepard . upgma .
Some associated R codes: BinMatInput_ordination.R . BinMatInput_reps.R . bunias_orientalis.R . check_data.R . consolidate.R . errors.R . group_names.R . nmds.R . nymphaea.R . peakRemove.R . peaks_consolidated.R . peaks_replicates.R . scree.R . shepard.R . upgma.R . Full BinMat package functions and examples
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