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BayesianTools  

General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
View on CRAN: Click here


Download and install BayesianTools package within the R console
Install from CRAN:
install.packages("BayesianTools")

Install from Github:
library("remotes")
install_github("cran/BayesianTools")

Install by package version:
library("remotes")
install_version("BayesianTools", "0.1.8")



Attach the package and use:
library("BayesianTools")
Maintained by
Florian Hartig
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-02-06
Latest Update: 2023-01-30
Description:
General-purpose MCMC and SMC samplers, as well as plot and diagnostic functions for Bayesian statistics, with a particular focus on calibrating complex system models. Implemented samplers include various Metropolis MCMC variants (including adaptive and/or delayed rejection MH), the T-walk, two differential evolution MCMCs, two DREAM MCMCs, and a sequential Monte Carlo (SMC) particle filter.
How to cite:
Florian Hartig (2017). BayesianTools: General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics. R package version 0.1.8, https://cran.r-project.org/web/packages/BayesianTools
Previous versions and publish date:
0.1.0 (2017-02-06 00:42), 0.1.1 (2017-04-05 13:33), 0.1.2 (2017-05-27 17:08), 0.1.3 (2017-08-02 14:15), 0.1.4 (2017-12-20 13:13), 0.1.5 (2018-07-16 22:10), 0.1.6 (2019-01-21 20:40), 0.1.7 (2019-12-09 19:20)
Other packages that cited BayesianTools R package
View BayesianTools citation profile
Other R packages that BayesianTools depends, imports, suggests or enhances
Functions, R codes and Examples using the BayesianTools R package
Some associated functions: AM . AdaptpCR . BayesianTools . DE . DEzs . DIC . DR . DRAM . DREAM . DREAMzs . GOF . Gfun . M . MAP . Metropolis . Twalk . TwalkMove . Twalksteps . VSEM . VSEMcreateLikelihood . VSEMcreatePAR . VSEMgetDefaults . WAIC . applySettingsDefault . betaFun . bridgesample . calibrationTest . checkBayesianSetup . combineChains . convertCoda . correctThin . correlationPlot . createBayesianSetup . createBetaPrior . createLikelihood . createMcmcSamplerList . createPosterior . createPrior . createPriorDensity . createProposalGenerator . createSmcSamplerList . createTruncatedNormalPrior . createUniformPrior . factorMatrice . gelmanDiagnostics . generateCRvalues . generateParallelExecuter . generateTestDensityMultiNormal . getBlock . getBlockSettings . getCredibleIntervals . getDharmaResiduals . getPanels . getPossibleSamplerTypes . getPredictiveDistribution . getPredictiveIntervals . getRmvnorm . getSample . getSetup . getVolume . likelihoodAR1 . likelihoodIidNormal . logSumExp . makeObjectClassCodaMCMC . marginalLikelihood . marginalPlot . marginalPlotDensity . marginalPlotViolin . mcmcMultipleChains . mergeChains . metropolisRatio . package-deprecated . plotDiagnostic . plotSensitivity . plotTimeSeries . plotTimeSeriesResiduals . plotTimeSeriesResults . propFun . rescale . runMCMC . sampleEquallySpaced . sampleMetropolis . scaleMatrix . setupStartProposal . smcSampler . stopParallel . sumSquare . testDensityBanana . testDensityGelmanMeng . testDensityInfinity . testDensityMultiNormal . testDensityNormal . testLinearModel . thinMatrix . tracePlot . updateGroups . updateProposalGenerator . vsemC . 
Some associated R codes: BayesianSetupGenerateParallel.R . BayesianTools.R . DIC.R . GOF.R . MAP.R . RcppExports.R . SBC.R . SMC.R . VSEM.R . WAIC.R . benchmark.R . blockUpdate.R . classBayesianOutput.R . classBayesianSetup.R . classLikelihood.R . classMcmcSampler.R . classMcmcSamplerList.R . classPosterior.R . classPrior.R . classSMCSamplerList.R . classSmcSampler.R . codaFunctions.R . convertCoda.R . diagnosticsGelman.R . getVolume.R . importPackages.R . marginalLikelihood.R . mcmcConfidence.R . mcmcDE.R . mcmcDEzs.R . mcmcDREAM.R . mcmcDREAM_helperFunctions.R . mcmcDREAMzs.R . mcmcFrancesco.R . mcmcMetropolis.R . mcmcMultipleChains.R . mcmcRun.R . mcmcSamplerAutomatic.R . mcmcTwalk.R . mcmcTwalk_helperFunctions.R . plotDiagnostic.R . plotMarginals.R . plotSensitivityOAT.R . plotTimeSeries.R . plotTrace.R . proposalGenerator.R . testFunctions.R . utils-Numerics.R . utils.R . utilsFrancesco.R .  Full BayesianTools package functions and examples
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