Other packages > Find by keyword >

BayesfMRI  

Spatial Bayesian Methods for Task Functional MRI Studies
View on CRAN: Click here


Download and install BayesfMRI package within the R console
Install from CRAN:
install.packages("BayesfMRI")

Install from Github:
library("remotes")
install_github("cran/BayesfMRI")

Install by package version:
library("remotes")
install_version("BayesfMRI", "0.11.0")



Attach the package and use:
library("BayesfMRI")
Maintained by
Amanda Mejia
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-06-08
Latest Update: 2025-03-07
Description:
Performs a spatial Bayesian general linear model (GLM) for task functional magnetic resonance imaging (fMRI) data on the cortical surface. Additional models include group analysis and inference to detect thresholded areas of activation. Includes direct support for the 'CIFTI' neuroimaging file format. For more information see A. F. Mejia, Y. R. Yue, D. Bolin, F. Lindgren, M. A. Lindquist (2020) and D. Spencer, Y. R. Yue, D. Bolin, S. Ryan, A. F. Mejia (2022) .
How to cite:
Amanda Mejia (2023). BayesfMRI: Spatial Bayesian Methods for Task Functional MRI Studies. R package version 0.11.0, https://cran.r-project.org/web/packages/BayesfMRI. Accessed 15 Jul. 2026.
Previous versions and publish date:
0.3.5 (2023-06-08 19:52), 0.3.11 (2023-12-18 09:50), 0.10.1 (2025-03-08 00:50), (2026-07-09 07:58)
Other packages that cited BayesfMRI R package
View BayesfMRI citation profile
Other R packages that BayesfMRI depends, imports, suggests or enhances
Complete documentation for BayesfMRI
Functions, R codes and Examples using the BayesfMRI R package
Some associated functions: AICc . BayesGLM . BayesGLM2 . BayesGLM_argChecks . BayesGLM_cifti . Bayes_Param . ELL . EM_Param . F.logwt . GLMEM_fixptseparate . GLMEM_objfn . HRF . INLA_Description . INLA_deps . Q_prime . TrQEww . TrQbb . TrSigB . act_prevalance . aic_Param . ar_order_Param . ar_smooth_Param . beta.posterior.thetasamp . cAIC . cderiv . check_INLA . cholQsample . combine_sessions_Param . contrasts_Param . create_listRcpp . dot-findTheta . dot-getSqrtInvCpp . dot-initialKP . dot-logDetQt . emTol_Param . extract_estimates . faces_Param . galerkin_db . get_posterior_densities . id_activations.classical . id_activations . id_activations.posterior . init_fixpt . init_objfn . is.BfMRI.sess . is.a_session . kappa_init_fn . make_HRFs . make_Q . make_data_list . make_mask . make_mesh . mask_Param_vertices . max.threads_Param . mesh_Param_either . mesh_Param_inla . neg_kappa_fn . neg_kappa_fn2 . neg_kappa_fn3 . neg_kappa_fn4 . num.threads_Param . organize_data . organize_data_pw . organize_replicates . plot.BayesGLM2_cifti . plot.BayesGLM_cifti . plot.act_BayesGLM_cifti . plot.prev_BayesGLM_cifti . prep_kappa2_optim . pw_estimate . pw_smooth . qsample . retro_mask_BGLM . retro_mask_mesh . return_INLA_Param . s2m . s2m_B . scale_BOLD_Param . scale_design_Param . scale_design_mat . seed_Param . session_names_Param . spde_Q_phi . submesh . summary.BayesGLM . summary.BayesGLM2 . summary.BayesGLM2_cifti . summary.BayesGLM_cifti . summary.act_BayesGLM . summary.act_BayesGLM_cifti . summary.prev_BayesGLM . summary.prev_BayesGLM_cifti . task_names_Param . trim_INLA_Param . trim_INLA_model_obj . verbose_Param . vertex_areas . vertices_Param . 
Some associated R codes: BayesGLM.R . BayesGLM2.R . BayesGLM2_utils.R . BayesGLM_cifti.R . BayesGLM_utils.R . BayesfMRI-package.R . EM_utils.R . F.logwt.R . INLA_deps.R . RcppExports.R . act_prevalence.R . act_prevalence_utils.R . cAIC.R . create_spde_vol3D.R . id_activations.R . id_activations_utils.R . is.BfMRI.sess.R . make_HRFs.R . make_mesh.R . organize_data.R . organize_replicates.R . plot.R . prewhitening.R . retro_mask.R . rox_args_docs.R . scale_design_mat.R . trim_INLA_model_obj.R . util.R . vertex_areas.R .  Full BayesfMRI package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
binhf  
Haar-Fisz Functions for Binomial Data
Binomial Haar-Fisz transforms for Gaussianization as in Nunes and Nason (2009). ...
Download / Learn more Package Citations See dependency  
SECFISH  
Disaggregate Variable Costs
These functions were developed within SECFISH project (Strengthening regional cooperation in the are ...
Download / Learn more Package Citations See dependency  
PermAlgo  
Permutational Algorithm to Simulate Survival Data
This version of the permutational algorithm generates a dataset in which event and censoring times ...
Download / Learn more Package Citations See dependency  
footBayes  
Fitting Bayesian and MLE Football Models
This is the first package allowing for the estimation, visualization and prediction of the most wel ...
Download / Learn more Package Citations See dependency  
pulseTD  
Identification of Transcriptional Dynamics using Pulse Models via 4su-Seq Data and RNA-Seq Data
A tool for analyzing the transcription, processing and degradation rates of genes by 4sU-seq (the Me ...
Download / Learn more Package Citations See dependency  

27,806

R Packages

239,283

Dependencies

73,837

Author Associations

27,807

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA