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BatchJobs  

Batch Computing with R
View on CRAN: Click here


Download and install BatchJobs package within the R console
Install from CRAN:
install.packages("BatchJobs")

Install from Github:
library("remotes")
install_github("cran/BatchJobs")

Install by package version:
library("remotes")
install_version("BatchJobs", "1.9")



Attach the package and use:
library("BatchJobs")
Maintained by
Bernd Bischl
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-05-25
Latest Update: 2022-03-21
Description:
Provides Map, Reduce and Filter variants to generate jobs on batch computing systems like PBS/Torque, LSF, SLURM and Sun Grid Engine. Multicore and SSH systems are also supported. For further details see the project web page.
How to cite:
Bernd Bischl (2012). BatchJobs: Batch Computing with R. R package version 1.9, https://cran.r-project.org/web/packages/BatchJobs. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0-485 (2012-05-25 19:08), 1.0-527 (2012-06-01 06:41), 1.0-606 (2012-07-04 17:19), 1.0-915 (2013-01-18 18:53), 1.0-966 (2013-04-10 20:18), 1.1-1135 (2013-10-02 08:16), 1.2 (2014-02-07 00:15), 1.3 (2014-07-10 05:00), 1.4 (2014-09-24 18:12), 1.5 (2014-10-30 20:13), 1.6 (2015-03-18 18:01), 1.7 (2017-11-28 18:41), 1.8 (2019-05-15 00:00)
Other packages that cited BatchJobs R package
View BatchJobs citation profile
Other R packages that BatchJobs depends, imports, suggests or enhances
Complete documentation for BatchJobs
Functions, R codes and Examples using the BatchJobs R package
Some associated functions: BatchJobs . addRegistryPackages . addRegistrySourceDirs . addRegistrySourceFiles . applyJobFunction . batchExpandGrid . batchExport . batchMap . batchMapQuick . batchMapResults . batchQuery . batchReduce . batchReduceResults . batchUnexport . callFunctionOnSSHWorkers . cfBrewTemplate . cfHandleUnknownSubmitError . cfKillBatchJob . cfReadBrewTemplate . checkIds . configuration . copyRequiredJobFiles . dbCreateJobDefTable . dbGetJobs . debugMulticore . debugSSH . filterResults . findJobs . findState . getConfig . getErrorMessages . getJob . getJobIds . getJobInfo . getJobLocation . getJobNr . getJobParamDf . getJobResources . getJobs . getLogFiles . getResources . getSSHWorkersInfo . grepLogs . installPackagesOnSSHWorkers . killJobs . loadConfig . loadExports . loadRegistry . loadResult . loadResults . makeClusterFunctions . makeClusterFunctionsInteractive . makeClusterFunctionsLSF . makeClusterFunctionsLocal . makeClusterFunctionsMulticore . makeClusterFunctionsOpenLava . makeClusterFunctionsSGE . makeClusterFunctionsSLURM . makeClusterFunctionsSSH . makeClusterFunctionsTorque . makeJob . makeRegistry . makeSSHWorker . makeSubmitJobResult . reduceResults . removeRegistry . removeRegistryPackages . removeRegistrySourceDirs . removeRegistrySourceFiles . resetJobs . sanitizePath . setConfig . setJobFunction . setJobNames . setRegistryPackages . showClusterStatus . showLog . showStatus . sourceRegistryFiles . submitJobs . sweepRegistry . syncRegistry . testJob . updateRegistry . waitForJobs . 
Some associated R codes: Exports.R . Job.R . Packages.R . Registry.R . Resources.R . Worker.R . WorkerLinux.R . addJob.R . applyJobFunction.R . batchApply.R . batchExpandGrid.R . batchMap.R . batchMapQuick.R . batchMapResults.R . batchQuery.R . batchReduce.R . batchReduceResults.R . buffer.R . callFunctionOnSSHWorkers.R . checkIdValid.R . checkIds.R . clusterFunctions.R . clusterFunctionsHelpers.R . clusterFunctionsInteractive.R . clusterFunctionsLSF.R . clusterFunctionsLocal.R . clusterFunctionsMulticore.R . clusterFunctionsOpenLava.R . clusterFunctionsSGE.R . clusterFunctionsSLURM.R . clusterFunctionsSSH.R . clusterFunctionsTorque.R . conf.R . database.R . debugMulticore.R . debugSSH.R . doJob.R . filenames.R . filterResults.R . findJobs.R . findStatus.R . getErrorMessages.R . getJob.R . getJobInfo.R . getJobLocation.R . getJobParamDf.R . getLogFiles.R . getSSHWorkersInfo.R . grepLogs.R . helpers.R . installPackagesOnSSHWorkers.R . killJobs.R . loadRegistry.R . loadResult.R . loadResults.R . reduceResults.R . resetJobs.R . sanitizePath.R . scheduleWorkerJobs.R . sendMail.R . setJobFunction.R . setJobNames.R . showClusterStatus.R . showLog.R . showStatus.R . sourceRegistryFiles.R . submitJobs.R . sweepRegistry.R . syncRegistry.R . testJob.R . updateRegistry.R . waitForJobs.R . writeFiles.R . zzz.R .  Full BatchJobs package functions and examples
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