Other packages > Find by keyword >

BRACoD.R  

BRACoD: Bayesian Regression Analysis of Compositional Data
View on CRAN: Click here


Download and install BRACoD.R package within the R console
Install from CRAN:
install.packages("BRACoD.R")

Install from Github:
library("remotes")
install_github("cran/BRACoD.R")

Install by package version:
library("remotes")
install_version("BRACoD.R", "0.0.2.0")



Attach the package and use:
library("BRACoD.R")
Maintained by
Adrian Verster
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-05-17
Latest Update: 2022-03-24
Description:
The goal of this method is to identify associations between bacteria and an environmental variable in 16S or other compositional data. The environmental variable is any variable which is measure for each microbiome sample, for example, a butyrate measurement paired with every sample in the data. Microbiome data is compositional, meaning that the total abundance of each sample sums to 1, and this introduces severe statistical distortions. This method takes a Bayesian approach to correcting for these statistical distortions, in which the total abundance is treated as an unknown variable. This package runs the python implementation using reticulate.
How to cite:
Adrian Verster (2021). BRACoD.R: BRACoD: Bayesian Regression Analysis of Compositional Data. R package version 0.0.2.0, https://cran.r-project.org/web/packages/BRACoD.R
Previous versions and publish date:
0.0.1.2 (2021-05-17 09:00)
Other packages that cited BRACoD.R R package
View BRACoD.R citation profile
Other R packages that BRACoD.R depends, imports, suggests or enhances
Functions, R codes and Examples using the BRACoD.R R package
Some associated functions: convergence_tests . install_bracod . obesity . remove_null . run_bracod . scale_counts . score . simulate_microbiome_counts . summarize_trace . threshold_count_data . 
Some associated R codes: BRACoD.R . otu-data.R .  Full BRACoD.R package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

critpath  
Setting the Critical Path in Project Management
Solving the problem of project management using CPM (Critical Path Method), PERT (Program Evaluation ...
Download / Learn more Package Citations See dependency  
steepness  
Testing Steepness of Dominance Hierarchies
The steepness package computes steepness as a property of dominance hierarchies. Steepness is define ...
Download / Learn more Package Citations See dependency  
ftaproxim  
Fault Tree Analysis Based on Proxel Simulation
Calculation and plotting of instantaneous unavailabilities of basic events along with the top event ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
rdbnomics  
Download DBnomics Data
R access to hundreds of millions data series from DBnomics API (). ...
Download / Learn more Package Citations See dependency  
mistral  
Methods in Structural Reliability
Various reliability analysis methods for rare event inference (computing failure probability and qua ...
Download / Learn more Package Citations See dependency  

22,114

R Packages

188,080

Dependencies

55,244

Author Associations

22,115

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns