Other packages > Find by keyword >

BNrich  

Pathway Enrichment Analysis Based on Bayesian Network
View on CRAN: Click here


Download and install BNrich package within the R console
Install from CRAN:
install.packages("BNrich")

Install from Github:
library("remotes")
install_github("cran/BNrich")

Install by package version:
library("remotes")
install_version("BNrich", "0.1.1")



Attach the package and use:
library("BNrich")
Maintained by
Samaneh Maleknia
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-03-20
Latest Update: 2020-04-04
Description:
Maleknia et al. (2020) . A novel pathway enrichment analysis package based on Bayesian network to investigate the topology features of the pathways. firstly, 187 kyoto encyclopedia of genes and genomes (KEGG) human non-metabolic pathways which their cycles were eliminated by biological approach, enter in analysis as Bayesian network structures. The constructed Bayesian network were optimized by the Least Absolute Shrinkage Selector Operator (lasso) and the parameters were learned based on gene expression data. Finally, the impacted pathways were enriched by Fisher
How to cite:
Samaneh Maleknia (2020). BNrich: Pathway Enrichment Analysis Based on Bayesian Network. R package version 0.1.1, https://cran.r-project.org/web/packages/BNrich. Accessed 04 Jun. 2026.
Previous versions and publish date:
0.1.0 (2020-03-20 10:30)
Other packages that cited BNrich R package
View BNrich citation profile
Other R packages that BNrich depends, imports, suggests or enhances
Complete documentation for BNrich
Functions, R codes and Examples using the BNrich R package
Some associated functions: BN_struct . BNrich . LASSO_BN . esti_par . fetch_data_file . parm_Ttest . unify_path . var_mat . 
Some associated R codes: BNrich.R .  Full BNrich package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

golem  
A Framework for Robust Shiny Applications
An opinionated framework for building a production-ready 'Shiny' application. This package contains ...
Download / Learn more Package Citations See dependency  
crplyr  
A 'dplyr' Interface for Crunch
In order to facilitate analysis of datasets hosted on the Crunch data platform ...
Download / Learn more Package Citations See dependency  
murphydiagram  
Murphy Diagrams for Forecast Comparisons
Data and code for the paper by Ehm, Gneiting, Jordan and Krueger ('Of Quantiles and Expectiles: Con ...
Download / Learn more Package Citations See dependency  
phers  
Calculate Phenotype Risk Scores
Use phenotype risk scores based on linked clinical and genetic data to study Mendelian disease and ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
shinybusy  
Busy Indicators and Notifications for 'Shiny' Applications
Add indicators (spinner, progress bar, gif) in your 'shiny' applications to show the user that the ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA