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BMRMM
View on CRAN: Click
here
Download and install BMRMM package within the R console
Install from CRAN:
install.packages("BMRMM")
Install from Github:
library("remotes")
install_github("cran/BMRMM")
Install by package version:
library("remotes")
install_version("BMRMM", "1.0.1")
Attach the package and use:
library("BMRMM")
Maintained by
Yutong Wu
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-11-15
Latest Update: 2023-06-19
Description:
The Bayesian Markov renewal mixed models take sequentially observed categorical data with continuous duration times, being either state duration or inter-state duration. These models comprehensively analyze the stochastic dynamics of both state transitions and duration times under the influence of multiple exogenous factors and random individual effect. The default setting flexibly models the transition probabilities using Dirichlet mixtures and the duration times using gamma mixtures. It also provides the flexibility of modeling the categorical sequences using Bayesian Markov mixed models alone, either ignoring the duration times altogether or dividing duration time into multiples of an additional category in the sequence by a user-specific unit. The package allows extensive inference of the state transition probabilities and the duration times as well as relevant plots and graphs. It also includes a synthetic data set to demonstrate the desired format of input data set and the utility of various functions. Methods for Bayesian Markov renewal mixed models are as described in: Abhra Sarkar et al., (2018) and Yutong Wu et al., (2022) .
How to cite:
Yutong Wu (2021). BMRMM: An Implementation of the Bayesian Markov (Renewal) Mixed Models. R package version 1.0.1, https://cran.r-project.org/web/packages/BMRMM. Accessed 11 Apr. 2025.
Previous versions and publish date:
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Complete documentation for BMRMM
Functions, R codes and Examples using
the BMRMM R package
Some associated functions: BMRMM . diag.BMRMM . foxp2 . foxp2_sm . foxp2sm . get_duration_diagnostic_plots . get_estimated_post_mean_and_sd . get_global_test_results . get_histogram_by_component . get_histogram_with_post_mean . get_lpml_waic_scores . get_mixture_params . get_mixture_probs_by_cov . get_tp_diagnostic_plots . get_tp_local_test_results . hist.BMRMM . model.selection.scores . plot.BMRMMsummary . summary.BMRMM .
Some associated R codes: BMRMM.R . add_isi_as_state.R . foxp2.R . foxp2_sm.R . foxp2sm.R . model_cont_isi.R . model_cont_isi_fn.R . model_transition.R . model_transition_fn.R . print_and_plot_results.R . print_and_plot_results_fn.R . Full BMRMM package functions and examples
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