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BIGr
View on CRAN: Click
here
Download and install BIGr package within the R console
Install from CRAN:
install.packages("BIGr")
Install from Github:
library("remotes")
install_github("cran/BIGr") Install by package version:
library("remotes")
install_version("BIGr", "0.7.2") Attach the package and use:
library("BIGr")
Maintained by
Alexander M. Sandercock
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[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-05-19
Latest Update: 2025-05-19
Description:
Functions developed within Breeding Insight to analyze diploid and polyploid breeding and genetic data. 'BIGr' provides the ability to filter variant call format (VCF) files, extract single nucleotide polymorphisms (SNPs) from diversity arrays technology missing allele discovery count (DArT MADC) files, and manipulate genotype data for both diploid and polyploid species. It also serves as the core dependency for the 'BIGapp' 'Shiny' app, which provides a user-friendly interface for performing routine genotype analysis tasks such as dosage calling, filtering, principal component analysis (PCA), genome-wide association studies (GWAS), and genomic prediction. For more details about the included 'breedTools' functions, see Funkhouser et al. (2017) <doi:10.2527/tas2016.0003>, and the 'updog' output format, see Gerard et al. (2018) <doi:10.1534/genetics.118.301468>.
How to cite:
Alexander M. Sandercock (2025). BIGr: Breeding Insight Genomics Functions for Polyploid and Diploid Species. R package version 0.7.2, https://cran.r-project.org/web/packages/BIGr. Accessed 24 Oct. 2026.
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