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BIGpopA
View on CRAN: Click
here
Download and install BIGpopA package within the R console
Install from CRAN:
install.packages("BIGpopA")
Install from Github:
library("remotes")
install_github("cran/BIGpopA") Install by package version:
library("remotes")
install_version("BIGpopA", "2.0.0") Attach the package and use:
library("BIGpopA")
Maintained by
Josue Chinchilla-Vargas
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-06-24
Latest Update: 2026-06-24
Description:
Tools for pedigree quality control and genomic breed/line composition estimation in diploid and polyploid breeding populations. 'BIGpopA' provides functions to check and correct common pedigree errors, assign parentage from SNP genotype data using Mendelian error rates, validate parent-offspring trios, and estimate genome-wide breed or line composition using quadratic programming. Supports both diploid and polyploid species. For more details about the included 'breedTools' functions, see Funkhouser et al. (2017) <doi:10.2527/tas2016.0003>.
How to cite:
Josue Chinchilla-Vargas (2026). BIGpopA: Pedigree Validation Genetic Composition of Diploids & Polyploids. R package version 2.0.0, https://cran.r-project.org/web/packages/BIGpopA. Accessed 09 Oct. 2026.
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