Other packages > Find by keyword >

BIGpopA  

Pedigree Validation Genetic Composition of Diploids & Polyploids
View on CRAN: Click here


Download and install BIGpopA package within the R console
Install from CRAN:
install.packages("BIGpopA")

Install from Github:
library("remotes")
install_github("cran/BIGpopA")

Install by package version:
library("remotes")
install_version("BIGpopA", "1.0.5")



Attach the package and use:
library("BIGpopA")
Maintained by
Josue Chinchilla-Vargas
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-06-24
Latest Update: 2026-06-24
Description:
Tools for pedigree quality control and genomic breed/line composition estimation in diploid and polyploid breeding populations. 'BIGpopA' provides functions to check and correct common pedigree errors, assign parentage from SNP genotype data using Mendelian error rates, validate parent-offspring trios, and estimate genome-wide breed or line composition using quadratic programming. Supports both diploid and polyploid species. For more details about the included 'breedTools' functions, see Funkhouser et al. (2017) <doi:10.2527/tas2016.0003>.
How to cite:
Josue Chinchilla-Vargas (2026). BIGpopA: Pedigree Validation Genetic Composition of Diploids & Polyploids. R package version 1.0.5, https://cran.r-project.org/web/packages/BIGpopA. Accessed 14 Jul. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited BIGpopA R package
View BIGpopA citation profile
Other R packages that BIGpopA depends, imports, suggests or enhances
Complete documentation for BIGpopA
Functions, R codes and Examples using the BIGpopA R package
Full BIGpopA package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
pps  
PPS Sampling
Functions to select samples using PPS (probability proportional to size) sampling. The package also ...
Download / Learn more Package Citations See dependency  
surveyCV  
Cross Validation Based on Survey Design
Functions to generate K-fold cross validation (CV) folds and CV test error estimates that take into ...
Download / Learn more Package Citations See dependency  
AutoWeatherIndices  
Calculating Weather Indices
Weather indices are formed from weather variables in this package. The users can input any number of ...
Download / Learn more Package Citations See dependency  
maGUI  
A Graphical User Interface for Microarray Data Analysis and Annotation
Provides a comprehensive graphical user interface for analysis of Affymetrix, Agilent, Illumina, Nim ...
Download / Learn more Package Citations See dependency  

27,806

R Packages

239,283

Dependencies

73,837

Author Associations

27,807

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA