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BIGpopA  

Pedigree Validation Genetic Composition of Diploids & Polyploids
View on CRAN: Click here


Download and install BIGpopA package within the R console
Install from CRAN:
install.packages("BIGpopA")

Install from Github:
library("remotes")
install_github("cran/BIGpopA")

Install by package version:
library("remotes")
install_version("BIGpopA", "1.0.5")



Attach the package and use:
library("BIGpopA")
Maintained by
Josue Chinchilla-Vargas
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-06-24
Latest Update: 2026-06-24
Description:
Tools for pedigree quality control and genomic breed/line composition estimation in diploid and polyploid breeding populations. 'BIGpopA' provides functions to check and correct common pedigree errors, assign parentage from SNP genotype data using Mendelian error rates, validate parent-offspring trios, and estimate genome-wide breed or line composition using quadratic programming. Supports both diploid and polyploid species. For more details about the included 'breedTools' functions, see Funkhouser et al. (2017) <doi:10.2527/tas2016.0003>.
How to cite:
Josue Chinchilla-Vargas (2026). BIGpopA: Pedigree Validation Genetic Composition of Diploids & Polyploids. R package version 1.0.5, https://cran.r-project.org/web/packages/BIGpopA. Accessed 18 Sep. 2026.
Previous versions and publish date:
1.0.5 (2026-06-24 10:20), 1.0.6 (2026-07-16 22:50), (2026-08-21 23:51)
Other packages that cited BIGpopA R package
View BIGpopA citation profile
Other R packages that BIGpopA depends, imports, suggests or enhances
Complete documentation for BIGpopA
Functions, R codes and Examples using the BIGpopA R package
Full BIGpopA package functions and examples
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